miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 123 bits (62), Expect = 6e-28
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctttccatggttgg 77
|||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctgacacagccacgtggattcccatcattgg 78
Query: 78 cttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
| |||||||||||||| | |||||||||| ||||| ||||||
Sbjct: 79 catgtgagcagggatctgctcccgccttgcatcaactgaatc 120
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 115 bits (58), Expect = 2e-25
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| ||| || |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattgactgtcaccgccacgtgt 64
Query: 64 ctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 123
|| |||| ||||||||||| | | ||||||||||||||||| ||||| |||||| |||
Sbjct: 65 tttctcatgattggcttgtgaccggcgatcggatcccgccttgcatcaactgaatcggag 124
Query: 124 tccgacgtga 133
|||| ||||
Sbjct: 125 gccgaggtga 134
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 109 bits (55), Expect = 9e-24
Identities = 92/103 (89%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtg-gctttccatggttg 76
||||||||||||||||||||||| ||| |||||||| |||||||| | ||||| | ||||
Sbjct: 19 tcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagttttcctttgttg 78
Query: 77 gcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 79 gtttgtgagcagggattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
Query: 64 ctttccatggttggcttgtgagc 86
||| ||||||||| ||||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 93.7 bits (47), Expect = 6e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| |||||| ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactgattggctaataccaccacgtgt 64
Query: 64 ctttccatggttggcttgt 82
||| ||||||||||||||
Sbjct: 65 cttgtcatggttggcttgt 83
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 89.7 bits (45), Expect = 9e-18
Identities = 91/104 (87%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctt--tccatggtt 75
||||||||||||||||||||||| |||||||||||| |||||||| ||| ||| | ||
Sbjct: 19 tcgcttggtgcaggtcgggaactaattggctgacacagccacgtgacttaatcc-tcatt 77
Query: 76 ggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
||||||||| |||| || ||||||||||||| ||||| ||||||
Sbjct: 78 ggcttgtgaccaggaattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 85.7 bits (43), Expect = 1e-16
Identities = 89/103 (86%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggct-gacaccgccacgtggctttccatggttg 76
||||||||||||||||||||||||||||||| | || |||||||||| || | | |||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctggttacagccacgtggcgtttctttattg 78
Query: 77 gcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
| |||||||||| ||| ||||||||||||| ||||| ||||||
Sbjct: 79 gtttgtgagcagtgattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 83.8 bits (42), Expect = 5e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| ||| || ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcaggtcgggaactgattggctgataccaccacgtgt 64
Query: 64 ctttccatggttggcttgtgag 85
||| ||||||| ||||||||
Sbjct: 65 cttgtaatggttgtcttgtgag 86
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 79.8 bits (40), Expect = 8e-15
Identities = 90/104 (86%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctt-tccatggttg 76
|||||||||||||||||||||| | |||||||||| |||||||| ||| | | | ||||
Sbjct: 19 tcgcttggtgcaggtcgggaaccaactggctgacacagccacgtgacttgtaccttgttg 78
Query: 77 gcttgtgag-cagggatcggatcccgccttgtatcaagtgaatc 119
| ||||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct: 79 gtttgtgagccagggattggatcccgccttgcatcaactgaatc 122
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 75.8 bits (38), Expect = 1e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 72 ggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatccgagtccgacgt 131
|||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||
Sbjct: 19 ggttggcttgtgagcagggatcggatcctgccttccatcaactgaatccgagcccgaggt 78
Query: 132 ga 133
||
Sbjct: 79 ga 80
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 73.8 bits (37), Expect = 5e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctttccatggttgg 77
|||||||||||||||||||||||||||||||||| ||| || || || |||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctgactccgacatatgttttgtcatggttgg 78
Query: 78 cttgtgagc 86
|||||||||
Sbjct: 79 cttgtgagc 87
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 73.8 bits (37), Expect = 5e-13
Identities = 92/109 (84%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctttccatggttgg 77
|||||||||||||||||||||| |||| ||||||| ||||| | ||| | || | ||
Sbjct: 19 tcgcttggtgcaggtcgggaaccaattgtctgacacatccacgaagttttacttgct-gg 77
Query: 78 cttgtgagcagggatcggatcccgccttgtatcaagtgaatccgagtcc 126
|||||||||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct: 78 tttgtgagcagggattggatcccgccttgcatcaaatgaatcggagtcc 126
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 67.9 bits (34), Expect = 3e-11
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 19 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 78
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 79 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 125
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44
|||||| |||||| |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggct 48
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 60.0 bits (30), Expect = 8e-09
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctttccatggttgg 77
|||||||||||||||||||| || || |||||||| |||||||| |||| | ||||
Sbjct: 19 tcgcttggtgcaggtcggga-ctaatccgctgacacagccacgtgtcttttacttattgg 77
Query: 78 cttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||||||||||||| || |||||||||| ||||| ||||||
Sbjct: 78 -ttgtgagcagggattggctcccgccttgcatcaactgaatc 118
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgatt 44
|||||| |||| | |||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 95 gatcccgccttgtatcaagtgaatccgagtccga 128
|||||||||||| ||||| |||||||||| ||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgagcccga 102
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 cctctgactcgcttggtgcaggtcgggaac 39
||||||| ||||||||||||||||||||||
Sbjct: 11 cctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ttacggcggcctctgactcgcttggtgcaggtcgggaac 39
|||||| || |||| | ||||||||||||||||||||||
Sbjct: 2 ttacggtggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
