miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 61.9 bits (31), Expect = 3e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 45 tgagccaaagatgacttgccgattttaccaaagaatttaaaactgataatggtgactggc 104
|||||||| ||||||||||||||||| ||| |||| | | ||||| ||||| | |||
Sbjct: 11 tgagccaaggatgacttgccgattttctcaacgaatctta--ctgattatggtatccggc 68
Query: 105 aagtcgactttggctctgtttccttc 130
|||| |||||||||||||||||||||
Sbjct: 69 aagttgactttggctctgtttccttc 94
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 58.0 bits (29), Expect = 4e-08
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 35 agaatgataatgagccaaagatgacttgccgattttaccaaagaatttaaaactgataat 94
||||||| | |||||||| |||||||||||||| ||| ||| ||| | || ||||| |
Sbjct: 1 agaatgagattgagccaaggatgacttgccgatgttatcaacaaatcttaa-ctgatttt 59
Query: 95 ggtgactggcaagtcgactttggctctgtttccttct 131
|||| | ||||||| ||| ||||||||||||||||||
Sbjct: 60 ggtgtccggcaagttgaccttggctctgtttccttct 96
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 79/95 (83%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 45 tgagccaaagatgacttgccga----ttttaccaaagaatttaa--aactgataatggtg 98
|||||||| |||||||||||| ||||||||| |||| ||| ||||||| |||||
Sbjct: 11 tgagccaaggatgacttgccgggtttttttaccaatgaatctaattaactgattctggtg 70
Query: 99 actggcaagtcgactttggctctgtttccttctct 133
| ||||||| ||| ||||||||||||||||||||
Sbjct: 71 tccggcaagttgaccttggctctgtttccttctct 105
