miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 105 bits (53), Expect = 8e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 20 cagattacacacgtactatatgcattctcttagttatctgattgagccgcgccaatatct 79
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 39 cagattacacacgtactatatacattctctcagttatctgattgagccgcgccaatatct 98
Query: 80 c 80
|
Sbjct: 99 c 99
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ttatctgattgagccgcgccaatatctc 80
||||||||||||||||||||||||||||
Sbjct: 77 ttatctgattgagccgcgccaatatctc 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagat 24
||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagat 34
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tatctgattgagccgcgccaatatctc 80
|||||||||||||||||||||||||||
Sbjct: 64 tatctgattgagccgcgccaatatctc 90
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagatt 25
|||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagatt 35
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcagat 24
||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagat 24
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 atctgattgagccgcgccaatatc 78
||||||||||||||||||||||||
Sbjct: 67 atctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago
truncatula (barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcactcaga 23
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgcgccaatatc 78
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgcgccaatatc 89
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgattgagccgcgccaatatc 78
||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatc 107
