miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 91.7 bits (46), Expect = 2e-18
Identities = 94/110 (85%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatgtctcaccggtactataaaatgt 78
|||||||||||||||||||||||||||||||||||||| |||| | | || | ||||
Sbjct: 1 gagaagtagctgtaaagctcaggagggatagcgccatgactcatcaccattactatatgt 60
Query: 79 ttgtatatctatattggcgctatccatcctgagttctatggcttcttctt 128
| | ||| | || |||||||||||||||||||||| |||||||||||||
Sbjct: 61 ctttgtatatgtaatggcgctatccatcctgagttccatggcttcttctt 110
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatgtctcacc 63
||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctcacc 45
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagttctatggcttcttctt 128
||||||||||||||||||||||| || ||||||||||
Sbjct: 84 ttggcgctatccatcctgagttccatagcttcttctt 120
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||||||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ttggcgctatccatcctgagtt 113
||||||||||||||||||||||
Sbjct: 63 ttggcgctatccatcctgagtt 84
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccat 55
|||||| | ||||||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttct 124
||||||||||||||||||| |||||||||
Sbjct: 71 gcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
|||||| | |||| ||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 93 tggcgctatccatcctgagttctatggcttct 124
|||||||||| |||||||||||||||| ||||
Sbjct: 94 tggcgctatctatcctgagttctatgggttct 125
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccatg 56
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 aagctcaggagggatagcgccatg 56
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgccat 55
|||| |||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 95 gcgctatccatcctgagttctatggcttcttc 126
||||||||||||||||||| |||||||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttc 116
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcca 54
|||| ||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ctgtaaagctcaggagggatagcgcc 53
|||| |||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
