miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 65
Query: 61 aaagcaatttacatcaacgttggctcaattatgttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaagcaatttacatcaacgttggctcaattatgttt 101
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 97.6 bits (49), Expect = 2e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 6 gaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaatggatt 65
Query: 61 aaagcaatttacatcaacgttg-gctcaattatgttt 96
||| |||||| | || ||||| ||||||||||||||
Sbjct: 66 aaaagaatttataccagcgttgcgctcaattatgttt 102
>RF00704;MIR397;AL161536.2/165502-165396 3702:Arabidopsis thaliana
(thale cress)
Length = 107
Score = 52.0 bits (26), Expect = 1e-06
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 gaacatcattgagtgcagcgttgatgtga-tttacttatctt-tttcattgttgaatgga 58
||||||||||||||||| ||||||||| | ||||||||| || || ||||||||||| |
Sbjct: 6 gaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttgaattaa 65
Query: 59 ttaaag 64
||||||
Sbjct: 66 ttaaag 71
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatg 26
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
