miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 2 ctccacgttggagaagcagggcacgtgcaaaccaacaaacacga 45
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctccatgttggagaagcagggcacgtgcaaaccaacaaacacga 46
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgcaaa 32
|||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgcaaa 32
|||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaaacc 34
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaacc 35
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgcaa 31
||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgcaa 31
||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgcaa 31
||||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 cgttggagaagcagggcacgtgca 30
||||||||||||||||||||||||
Sbjct: 8 cgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaaa 32
|||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaaa 25
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaaa 32
|||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaaa 25
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ttgcacgtgctccactcctccaacatg 89
|||||||||||||||| ||||||||||
Sbjct: 55 ttgcacgtgctccacttctccaacatg 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgca 30
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaaa 32
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 ccacgttggagaagcagggcacgtgca 30
||||| |||||||||||||||||||||
Sbjct: 5 ccacgctggagaagcagggcacgtgca 31
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 gttggagaagcagggcacgtgca 30
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC152057.11/32164-32084 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ccacgttggagaagcagggcac 25
||||||||||||||||||||||
Sbjct: 5 ccacgttggagaagcagggcac 26
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagaagcagggcacgtgcaa 31
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 cacgttggagaagcagggcacgtgca 30
|||| |||||||||||||||||||||
Sbjct: 6 cacggtggagaagcagggcacgtgca 31
