miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 246 bits (124), Expect = 6e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 5 caccggcatctgatgaagctgccagcatgatctagttaactttatttctccgttgtttat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccggcatctgatgaagctgccagcatgatctagttaactttatttctccgttgtttat 60
Query: 65 ccatgacaatggaaaagggataagtgtcgattagatcatgttcgtagtttcacccgttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatgacaatggaaaagggataagtgtcgattagatcatgttcgtagtttcacccgttga 120
Query: 125 ctgt 128
||||
Sbjct: 121 ctgt 124
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 109 bits (55), Expect = 1e-23
Identities = 109/126 (86%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 5 caccggcatctgatgaagctgccagcatgatctagttaactttatttctccgttgt--tt 62
|||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |||| |
Sbjct: 1 caccggcatctgatgaagctgccagcatgatctaattagctttctttatcctttgttgtg 60
Query: 63 atccatgacaatggaaaagggataagtgtcgattagatcatgttcgtagtttcacccgtt 122
| |||||| |||| ||| ||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 61 tttcatgacgatggttaagagatcagtctcgattagatcatgttcgcagtttcacccgtt 120
Query: 123 gactgt 128
||||||
Sbjct: 121 gactgt 126
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 catctgatgaagctgccagcatgatct 37
|||| ||||||||||||||||||||||
Sbjct: 7 catcagatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctagttaacttta 48
|||||||||||||||||||||| || |||||
Sbjct: 14 tgaagctgccagcatgatctagctagcttta 44
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctag 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
