miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 97.6 bits (49), Expect = 3e-20
Identities = 104/124 (83%), Gaps = 10/124 (8%)
Strand = Plus / Plus
Query: 5 caccggcatctgatgaagctgccagcatgatctaattatctttctttctctgt------- 57
|||||||||||||||||||||||||||||||||| ||| |||| |||||| ||
Sbjct: 1 caccggcatctgatgaagctgccagcatgatctagttaactttatttctccgttgtttat 60
Query: 58 ---tgacgatggaaaagacatgagtgttgattagatcatgttcgcagtttcacccgttga 114
|||| ||||||||| || ||||| |||||||||||||||| |||||||||||||||
Sbjct: 61 ccatgacaatggaaaagggataagtgtcgattagatcatgttcgtagtttcacccgttga 120
Query: 115 ctgt 118
||||
Sbjct: 121 ctgt 124
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 95.6 bits (48), Expect = 1e-19
Identities = 106/126 (84%), Gaps = 12/126 (9%)
Strand = Plus / Plus
Query: 5 caccggcatctgatgaagctgccagcatgatctaattatctttcttt---ctctgt---- 57
|||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 1 caccggcatctgatgaagctgccagcatgatctaattagctttctttatcctttgttgtg 60
Query: 58 -----tgacgatggaaaagacatgagtgttgattagatcatgttcgcagtttcacccgtt 112
||||||||| |||| || ||| | ||||||||||||||||||||||||||||||
Sbjct: 61 tttcatgacgatggttaagagatcagtctcgattagatcatgttcgcagtttcacccgtt 120
Query: 113 gactgt 118
||||||
Sbjct: 121 gactgt 126
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 catctgatgaagctgccagcatgatct 37
|||| ||||||||||||||||||||||
Sbjct: 7 catcagatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gatgaagctgccagcatgatct 37
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tgaagctgccagcatgatctaa 39
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35
