miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 67
Query: 61 tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 127
Query: 121 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctctacatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctctacatct 187
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 131 bits (66), Expect = 4e-30
Identities = 152/178 (85%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 1 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct: 8 gagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactta 67
Query: 61 tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120
|||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 68 tggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatat 127
Query: 121 ctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctaca 177
|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 128 ctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 121 bits (61), Expect = 3e-27
Identities = 145/170 (85%), Gaps = 6/170 (3%)
Strand = Plus / Plus
Query: 6 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 65
|||||||||||||||||||||| | || || ||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 66 cccacagccctataagca-gagattataattttggataggcttgtggcttgcatatctca 124
||||||||||||| | || || | ||||| ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatcag----tcatttt-gatgggcctgcggcttgcatatctca 115
Query: 125 ggagcttcattaccttgtattagatccttgtttggattgaagggagctct 174
||||||| ||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 119 bits (60), Expect = 1e-26
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 6 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 65
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 66 cccacagccctataagcagagattataattttggataggcttgtggcttgcatatctcag 125
||||||||||| | || || | || ||| |||||||| || |||||||||||||
Sbjct: 73 tccacagccctacccgaagttatactttttctgggtaggcttgcggtttgcatatctcag 132
Query: 126 gagcttcattaccttgtattagatccttgtttggattgaagggagctctaca 177
||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 133 gagctgcattaccctaagcttaatccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 101 bits (51), Expect = 3e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 8 gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67
Query: 61 tggatcc 67
|||||||
Sbjct: 68 tggatcc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 75.8 bits (38), Expect = 2e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60
||||||||||||||||||||||| ||| ||||| || |||||||||||||||| |||
Sbjct: 8 gagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgaccta 67
Query: 61 tggatcccacagccctat 78
||||| || |||||||||
Sbjct: 68 tggattcctcagccctat 85
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 113 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 170
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 124 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 183
Query: 171 ctctacat 178
||||||||
Sbjct: 184 ctctacat 191
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 155 tttggattgaagggagctctacatct 180
||||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatct 197
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 155 tttggattgaagggagctctacatct 180
|||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 ttggattgaagggagctctaca 177
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 155 tttggattgaagggagctctacatct 180
|||||||||||||||||||| |||||
Sbjct: 155 tttggattgaagggagctctgcatct 180
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 155 tttggattgaagggagctctacatct 180
|||||||||||||||||||| |||||
Sbjct: 242 tttggattgaagggagctctgcatct 267
