miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tctgatgttggcatggttcaatcaaatcgaagcactcagctgcctgctgagttctttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tctgatgttggcatggttcaatcaaatcgaagcactcagctgcctgctgagttctttaat 67
Query: 61 ctgattgagccgtgccaatatcgccat 87
|||||||||||||||||||||||||||
Sbjct: 68 ctgattgagccgtgccaatatcgccat 94
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 48 tgagttctttaatctgattgagccgtgccaatatc 82
||||| |||||||||||||||||||||||||||||
Sbjct: 51 tgagtcctttaatctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 51 gttctttaatctgattgagccgtgccaatatcgc 84
||||||| ||||||||||||||||||||||||||
Sbjct: 45 gttctttcatctgattgagccgtgccaatatcgc 78
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 ctttaatctgattgagccgtgccaatatc 82
|||||||||||||||||||||||||||||
Sbjct: 58 ctttaatctgattgagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 ctttaatctgattgagccgtgccaatatc 82
|||||||||||||||||||||||||||||
Sbjct: 59 ctttaatctgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tttaatctgattgagccgtgccaatatc 82
||||||||||||||||||||||||||||
Sbjct: 56 tttaatctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 48 tgagttctttaatctgattgagccgtgccaatatc 82
||||| ||||| |||||||||||||||||||||||
Sbjct: 56 tgagtactttagtctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum
bicolor (sorghum)
Length = 144
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 gatgttggcatggttcaatcaaatc 28
|||||||||||||||||||||||||
Sbjct: 11 gatgttggcatggttcaatcaaatc 35
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tttaatctgattgagccgtgccaatatc 82
|||||| |||||||||||||||||||||
Sbjct: 65 tttaatttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gatgttggcatggttcaatcaaat 27
||||||||||||||||||||||||
Sbjct: 10 gatgttggcatggttcaatcaaat 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tttaatctgattgagccgtgccaatatc 82
|||| |||||||||||||||||||||||
Sbjct: 76 tttagtctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gatgttggcatggttcaatcaaa 26
|||||||||||||||||||||||
Sbjct: 11 gatgttggcatggttcaatcaaa 33
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tctgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
