miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 ggggatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctg 67
Query: 61 attgagccgtgccaatatccccca 84
||||||||||||||||||||||||
Sbjct: 68 attgagccgtgccaatatccccca 91
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 135 bits (68), Expect = 1e-31
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 ggggatgttggaatggctcaatcaaatcaaatctcccaa-agttttgggtcctttaatct 59
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatct 67
Query: 60 gattgagccgtgccaatatc 79
||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatc 87
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 87.7 bits (44), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 8/86 (9%)
Strand = Plus / Plus
Query: 1 ggggatgttggaatggctcaatcaaatcaaatctcccaaag-------ttttgggtcctt 53
|||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct: 8 ggggatgttggaatggctcaatcaaatcaaatct-ccaaagtctttgattttgggtcttt 66
Query: 54 taatctgattgagccgtgccaatatc 79
|||| |||||||||||||||||||||
Sbjct: 67 taatttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/83 (86%), Gaps = 5/83 (6%)
Strand = Plus / Plus
Query: 2 gggatgttggaatggctcaatcaaatcaaatctcccaaagttt-----tgggtcctttaa 56
|||||||||| |||||||||||| |||||||||||||| | | |||||| |||||
Sbjct: 1 gggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtcttttaa 60
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgtgccaatatc 83
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 gtcctttaatctgattgagccgtgccaatatc 79
||||||||||||||||||||||||||||||||
Sbjct: 54 gtcctttaatctgattgagccgtgccaatatc 85
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 ctttaatctgattgagccgtgccaatatc 79
|||||||||||||||||||||||||||||
Sbjct: 61 ctttaatctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 ttgggtcctttaatctgattgagccgtgccaatatc 79
|||||| |||| ||||||||||||||||||||||||
Sbjct: 41 ttgggttctttcatctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 ctttaatctgattgagccgtgccaatatc 79
||||| |||||||||||||||||||||||
Sbjct: 62 ctttagtctgattgagccgtgccaatatc 90
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 tttaatctgattgagccgtgccaatatc 79
|||| |||||||||||||||||||||||
Sbjct: 76 tttagtctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 78 tctgattgagccgtgccaatatc 100
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 81 tctgattgagccgtgccaatatc 103
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 102 tctgattgagccgtgccaatatc 124
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
