miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 67
Query: 61 ctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||
Sbjct: 68 ctcagattgagccgcgccaatatcacttt 96
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttaca--cattctgttgtaaaggacg 58
||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatacg 67
Query: 59 atctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||||
Sbjct: 68 atctcagattgagccgcgccaatatcacttt 98
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
||||||||||||||||||||||||||||||| ||||| | | | | |||||| |||||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacgat 67
Query: 61 ctcagattgagccgcgccaatatcactt 88
||||||||||||||||||||||||||||
Sbjct: 68 ctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 91.7 bits (46), Expect = 1e-18
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
|||||||||||||||||||||||||||||||||||||| | | |||||| |||||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttacgaa--gagccgtaaagaacgat 65
Query: 61 ctcagattgagccgcgccaatatcacttt 89
||| |||||||||||||||||||||||||
Sbjct: 66 ctctgattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 79.8 bits (40), Expect = 5e-15
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccgat 60
Query: 61 ctcagattgagccgcgccaatatcactt 88
||||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 58 gatctcagattgagccgcgccaatatcacttt 89
||||||||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttaca 39
||||||||||||||||||||||| |||||| ||||||||
Sbjct: 8 agcgatgttggtgaggttcaatctgaagacagatttaca 46
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 ctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcactt 88
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccga 26
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
