miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 143 bits (72), Expect = 7e-34
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 1 ctgatggagcatcatcaagattcacaaactttatctagggctagtgggttgttgtggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctgatggagcatcatcaagattcacaaactttatctagggctagtgggttgttgtggtcc 67
Query: 61 cnnnnnnnnnnnnnnnnnnnnnnnnctcttgcttcaatccaatagtccctttgatatggg 120
| |||||||||||||||||||||||||||||||||||
Sbjct: 68 cttttctttttctttttttctttttctcttgcttcaatccaatagtccctttgatatggg 127
Query: 121 aatcttgatgatgctgcagcggca 144
||||||||||||||||||||||||
Sbjct: 128 aatcttgatgatgctgcagcggca 151
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 71.9 bits (36), Expect = 2e-12
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 93 ttcaatccaatagtccctttgatatgggaatcttgatgatgctgcagcggca 144
||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 89 ttcaatccaatag-ccctttgaattgggaatcttgatgatgctgcagcggca 139
Score = 61.9 bits (31), Expect = 2e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 4 atggagcatcatcaagattcacaaactttatctagggctagtg 46
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 11 atggagcatcatcaagattcacaagctttat-tagggctagtg 52
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 109 ctttgatatgggaatcttgatgatgctgcagcggca 144
||||||| ||||||||||||||||||||||||||||
Sbjct: 100 ctttgatgtgggaatcttgatgatgctgcagcggca 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaa 27
|||||||||||||||||||||||||
Sbjct: 10 gatggagcatcatcaagattcacaa 34
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||||||||||
Sbjct: 167 tatgggaatcttgatgatgctgcagcggca 196
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||||
Sbjct: 10 gatggagcatcatcaagattcacaaa 35
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 58.0 bits (29), Expect = 3e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 gatggagcatcatcaagattcacaaactttatctagggcta 43
||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 4 gatggagcaccatcaagattcacaaactttat-tagggcta 43
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgcagcggc 143
|||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 cctttgatatgggaatcttgatgatgctgca 138
||||| |||||||||||||||||||||||||
Sbjct: 94 cctttcatatgggaatcttgatgatgctgca 124
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagcggca 144
|||||||||||||||||||||||| |||||
Sbjct: 149 tatgggaatcttgatgatgctgcatcggca 178
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 120 gaatcttgatgatgctgcagcggca 144
|||||||||||||||||||||||||
Sbjct: 84 gaatcttgatgatgctgcagcggca 108
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgcagcggca 144
||||||||||||||||||||||| |||||
Sbjct: 101 atgggaatcttgatgatgctgcatcggca 129
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcacaaacttta 33
||||||||||||||||||||||| |||||
Sbjct: 12 tggagcatcatcaagattcacaagcttta 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ctttgatatgggaatcttgatgatgctgcag 139
||||||| || ||||||||||||||||||||
Sbjct: 92 ctttgatttgagaatcttgatgatgctgcag 122
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcacaaa 28
||||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaaa 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tatgggaatcttgatgatgctgcagc 140
|||| |||||||||||||||||||||
Sbjct: 89 tatgagaatcttgatgatgctgcagc 114
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 atgggaatcttgatgatgctgca 138
|||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgca 120
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgca 86
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgca 114
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tggagcatcatcaagattcaca 26
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgatggagcatcatcaagattcaca 26
|||||| |||||||||||||||||||
Sbjct: 8 ctgatgcagcatcatcaagattcaca 33
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgca 179
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tgggaatcttgatgatgctgca 138
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
