miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 418 bits (211), Expect = e-116
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 1 ttaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgact 66
Query: 61 cattcatccaaatactgagttaaaaagttcagaaaacaaaaggggcgggtgctgtagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cattcatccaaatactgagttaaaaagttcagaaaacaaaaggggcgggtgctgtagaaa 126
Query: 121 agaaggtttacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agaaggtttacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcc 186
Query: 181 tgtacttggactgaagggagctccctttact 211
|||||||||||||||||||||||||||||||
Sbjct: 187 tgtacttggactgaagggagctccctttact 217
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 153 bits (77), Expect = 1e-36
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 128 ttacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtactt 187
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 101 ttacccagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtactt 160
Query: 188 ggactgaagggagctcccttt 208
|||||||||||||||||||||
Sbjct: 161 ggactgaagggagctcccttt 181
Score = 149 bits (75), Expect = 2e-35
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 taagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactc 61
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactc 66
Query: 62 attcatccaaatactgagttaaa 84
|||||||||||||||||||||||
Sbjct: 67 attcatccaaatactgagttaaa 89
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 127 bits (64), Expect = 7e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 137 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 196
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 197 ggagctcccttt 208
||||||||||||
Sbjct: 174 ggagctcccttt 185
Score = 81.8 bits (41), Expect = 4e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 2 taagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgact 60
||||||||||||||| |||||||||||||||| | || ||||| |||||||||| ||||
Sbjct: 8 taagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgact 67
Query: 61 cattcatccaaat 73
|||||||||||||
Sbjct: 68 cattcatccaaat 80
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 125 bits (63), Expect = 3e-28
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 129 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttg 188
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct: 95 tacccagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttg 154
Query: 189 gactgaagggagctccctt 207
|||||||||||||||||||
Sbjct: 155 gactgaagggagctccctt 173
Score = 123 bits (62), Expect = 1e-27
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgact-c 61
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcc 68
Query: 62 attcatccaaatactgagttaa 83
|||||||||||||||| |||||
Sbjct: 69 attcatccaaatactgtgttaa 90
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 123 bits (62), Expect = 1e-27
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 133 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 192
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 94 cagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggact 153
Query: 193 gaagggagctccct 206
||||||||||||||
Sbjct: 154 gaagggagctccct 167
Score = 85.7 bits (43), Expect = 2e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 4 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcat 63
|||||||||||||||||||| |||||||||| || || | ||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 64 tcatccaaatactga 78
|||||||||| ||||
Sbjct: 70 tcatccaaatgctga 84
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 111 bits (56), Expect = 4e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 128 ttacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtactt 187
||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| | ||
Sbjct: 99 ttacccagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcatt 158
Query: 188 ggactgaagggagctccctttact 211
||||||||||||||||||||||||
Sbjct: 159 ggactgaagggagctccctttact 182
Score = 67.9 bits (34), Expect = 5e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 41 gatttaattagctgccgactcattcatccaaatactgagtta 82
||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgagtta 88
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 83.8 bits (42), Expect = 9e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 140 tgagtgaatgatgcgggag-acaaattgaatcttaagcttcctgtacttggactgaaggg 198
||||||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||
Sbjct: 104 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 163
Query: 199 agctcc 204
||||||
Sbjct: 164 agctcc 169
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 7 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 66
|||||||||| ||||||| |||||| || |||| || |||| ||||||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 67 tccaaat 73
|||||||
Sbjct: 61 tccaaat 67
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 135 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtacttggactg 193
|||||||| ||||||||||| |||||||||||| |||| | |||| || | |||||||||
Sbjct: 110 gtaaatgaatgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactg 168
Query: 194 aagggagctccct 206
|||||||||||||
Sbjct: 169 aagggagctccct 181
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgg 30
||||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttcttcggtccactcatgg 36
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 65.9 bits (33), Expect = 2e-10
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ttaagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgac 59
||||||||||| ||||||||||||||||||| || | ||| ||| ||||| ||||||||
Sbjct: 7 ttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgac 66
Query: 60 tcattcatccaaa 72
|||||||| ||||
Sbjct: 67 tcattcattcaaa 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 180 ctgtacttggactgaagggagctcccttta 209
|||| |||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttta 192
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 63.9 bits (32), Expect = 8e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
|||||||| | |||||||||||||||||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactca 68
Query: 63 ttca 66
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 4 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcat 63
||||||||| ||| |||||| ||| ||| | | || |||| |||||||| |||||||||
Sbjct: 10 agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 69
Query: 64 tcatccaaatactgagt 80
|||||||||||| ||||
Sbjct: 70 tcatccaaataccgagt 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 136 taaatgagtgaatgatgcgggagacaaattg 166
||||||| |||||||||||| ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
|||||||| | |||||||||||||| ||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 68
Query: 63 ttca 66
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
|||||||| | |||||||||||||| ||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 68
Query: 63 ttca 66
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 46 aattagctgccgactcattcatccaaatactgagt 80
|||||||| ||||||||||||||||||||| ||||
Sbjct: 52 aattagcttccgactcattcatccaaataccgagt 86
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 46 aattagctgccgactcattcatccaaatactgagt 80
|||||||| ||||||||||||||||||||| ||||
Sbjct: 52 aattagcttccgactcattcatccaaataccgagt 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 136 taaatgagtgaatgatgcgggagacaaattg 166
||||||| |||||||||||| ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattg 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 186 ttggactgaagggagctcccttt 208
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 46 aattagctgccgactcattcatccaaatactgagt 80
|||||||| |||| |||||||||||||||||||||
Sbjct: 52 aattagcttccgaatcattcatccaaatactgagt 86
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 46 aattagctgccgactcattcatccaaatactgagt 80
|||||||| ||||||||||||||||||||| ||||
Sbjct: 52 aattagcttccgactcattcatccaaataccgagt 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 136 taaatgagtgaatgatgcgggagacaaattg 166
||||||| |||||||||||| ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 54.0 bits (27), Expect = 8e-07
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 1 ttaagagagctttcttcagtccactcatgggtggcggta--ggatttaattagctgccga 58
|||||||||||| ||||||||||||||||| ||| | || || || ||||||||||||
Sbjct: 7 ttaagagagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccga 65
Query: 59 ctcattcatccaaa 72
||||||||| ||||
Sbjct: 66 ctcattcattcaaa 79
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 180 ctgtacttggactgaagggagctccctt 207
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 180 ctgtacttggactgaagggagctcccttt 208
|||| ||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctcccttt 189
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 180 ctgtacttggactgaagggagctcccttt 208
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 7 gagctttcttcagtccactcatgggtggcggtaggattta-attagctgccgactcattc 65
|||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 66 atccaaa 72
|| ||||
Sbjct: 61 attcaaa 67
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa
Japonica Group
Length = 193
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
||||||||| |||||||||||||| | |||| ||||| ||| |||||||||||| |||
Sbjct: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
Query: 63 t 63
|
Sbjct: 69 t 69
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgg 30
|||||||||| |||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 185 cttggactgaagggagctcccttt 208
||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcccttt 182
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 aagagagctttcttcagtccactcatgg 30
||||||||| ||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 185 cttggactgaagggagctcccttt 208
||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctcccttt 189
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 185 cttggactgaagggagctccctt 207
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 185 cttggactgaagggagctccct 206
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 aattagctgccgactcattcat 67
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 185 cttggactgaagggagctccct 206
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
