miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 355 bits (179), Expect = 1e-97
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 1 aagaaggagctctcttcagtccagtccaaggcggttgagggctgggacttagctgctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagaaggagctctcttcagtccagtccaaggcggttgagggctgggacttagctgctgac 66
Query: 61 tcgttggttcaagagctcatcatcatcaatgtgtaagagatgtctttttgatccaacgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tcgttggttcaagagctcatcatcatcaatgtgtaagagatgtctttttgatccaacgaa 126
Query: 121 gctggagctgtgttcagttatggctgtcatgtcttggactgaagggagctccctccaat 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gctggagctgtgttcagttatggctgtcatgtcttggactgaagggagctccctccaat 185
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 107 bits (54), Expect = 5e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 105 tttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttggactgaag 164
||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 115 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 174
Query: 165 ggagctccct 174
||||||||||
Sbjct: 175 ggagctccct 184
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya
(papaya)
Length = 231
Score = 79.8 bits (40), Expect = 1e-14
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 aagaaggagctctcttcagtccagtccaaggcggttgagggctg-ggacttagctgctga 59
||||||||||||||||||||||||||| |||||| ||| |||| |||| ||||||||
Sbjct: 7 aagaaggagctctcttcagtccagtccgaggcggcggagagctgaggacacggctgctga 66
Query: 60 ctcgttggttcaagagctcatcatcatc 87
||||||| ||||||| ||||||| ||||
Sbjct: 67 ctcgttgattcaagaactcatcagcatc 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 151 gtcttggactgaagggagctccctcc 176
||||||||||||||||||||||||||
Sbjct: 197 gtcttggactgaagggagctccctcc 222
>RF00638;MIR159;AP009725.1/8577-8386 34305:Lotus japonicus
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 65/77 (84%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 3 gaaggagctctcttcagtccagtccaaggcggttgagg---gctgggacttagctgctga 59
||||| |||| |||||||||||| | ||||||| || | |||| |||| |||||||||
Sbjct: 9 gaaggggctcacttcagtccagttcgaggcggtagaagatggctgagactcagctgctga 68
Query: 60 ctcgttggttcaagagc 76
||||||||||| |||||
Sbjct: 69 ctcgttggttcgagagc 85
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 109 tgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttggactgaaggg 166
||||||||||| || ||||||| |||||| || |||||||| ||||||||||||||
Sbjct: 117 tgatccaacgatgcgggagctgcattcagtcatcactgtcatggcttggactgaaggg 174
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 160 cttggactgaagggagctccct 181
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccctc 182
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 158 cttggactgaagggagctccct 179
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 152 cttggactgaagggagctccct 173
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccct 189
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 191 cttggactgaagggagctccct 212
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccct 183
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccct 182
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctccct 174
||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 148 tcttggactgaagggagctccc 169
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctccc 168
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tcttggactgaagggagctccc 173
||||||||||||||||||||||
Sbjct: 149 tcttggactgaagggagctccc 170
