miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 ttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgac 66
Query: 61 tcattcattcaaacacactagaaaagggagcattaaagatagctgctattgtgaatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tcattcattcaaacacactagaaaagggagcattaaagatagctgctattgtgaatgtgt 126
Query: 121 gaatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaagggagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaagggagctc 186
Query: 181 cctttagc 188
||||||||
Sbjct: 187 cctttagc 194
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 170 bits (86), Expect = 4e-42
Identities = 152/172 (88%), Gaps = 4/172 (2%)
Strand = Plus / Plus
Query: 14 cttcagtccactcatgggcgggcgaaggttttgaattatctgccgactcattcattcaaa 73
||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 8 cttcagtccactcatggacgggcgaagggtttggattagctgccgactcattcattcaaa 67
Query: 74 cacactagaaaagggagcattaaagatagctgctattgtgaatgtgtgaatgatgcggga 133
|||| |||| |||| || | | ||||||||||||||||||||||||| ||||||
Sbjct: 68 cacagtagacaagg-agtggcagcg---gctgctattgtgaatgtgtgaatgacgcggga 123
Query: 134 gataaatttcatacttctcttctctgtgcttggactgaagggagctcccttt 185
||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 gattaatttcatccttttcttctctgtgcttggactgaagggagctcccttt 175
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 145 bits (73), Expect = 3e-34
Identities = 159/184 (86%), Gaps = 4/184 (2%)
Strand = Plus / Plus
Query: 3 aagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgactc 62
|||||||||||||||||||||||||||| || |||||||||||||| |||| |||||
Sbjct: 9 aagagagctctcttcagtccactcatggataggaaaaggttttgaattagctgctgactc 68
Query: 63 attcattcaaacacactagaaaagggagcattaaagata-gctgctattgtgaatgtgtg 121
||||||||||||||| || || | ||||| | ||| ||| |||||||||||||||
Sbjct: 69 attcattcaaacacaataagaa--gaagcatgatgaatatgcta-tattgtgaatgtgtg 125
Query: 122 aatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaagggagctcc 181
||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 126 aatgatgcgggagctaaatttcatctttctcttgtctttgcttggactgaagggagctcc 185
Query: 182 cttt 185
||||
Sbjct: 186 cttt 189
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 119 bits (60), Expect = 1e-26
Identities = 155/184 (84%), Gaps = 7/184 (3%)
Strand = Plus / Plus
Query: 1 ttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgac 60
||||||||||| ||||||||||||||||| ||| | || |||| |||| ||||||||
Sbjct: 7 ttaagagagcttccttcagtccactcatggatgggttaggggtttggattagctgccgac 66
Query: 61 tcattcattcaaacacactagaaaagggagcattaaagatagctgctattgtgaatgtgt 120
||||||||||||||||| ||||| ||| | | || | | ||| |||||||||||
Sbjct: 67 tcattcattcaaacacagtagaat--gga--aatggagtt---tactactgtgaatgtgt 119
Query: 121 gaatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaagggagctc 180
|||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct: 120 gaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctc 179
Query: 181 cctt 184
||||
Sbjct: 180 cctt 183
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 97.6 bits (49), Expect = 5e-20
Identities = 73/77 (94%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 110 tgtgaatgtgtgaatgatgcgggagataaatttcatacttct-cttctctgtgcttggac 168
||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||
Sbjct: 115 tgtgaatgtgtgaatgatgcgggagataa-tttcat-cttcttcttgtctgtgcttggac 172
Query: 169 tgaagggagctcccttt 185
|||||||||||||||||
Sbjct: 173 tgaagggagctcccttt 189
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 85.7 bits (43), Expect = 2e-16
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 104 tgctattgtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgct 163
|||||||||||||||||||||||||| |||| | |||||| | ||| ||| ||| ||||
Sbjct: 103 tgctattgtgaatgtgtgaatgatgcaggaggtgaatttcttccttttct--tctttgct 160
Query: 164 tggactgaagggagctcccttt 185
||||||||||||||||||||||
Sbjct: 161 tggactgaagggagctcccttt 182
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 77.8 bits (39), Expect = 5e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 104 tgctattgtgaatgtgtgaatgatgcgggagataaattt-catacttctcttctctgtgc 162
||||| ||||| ||||||||||||||||||||||| ||| ||| || ||| |||||||
Sbjct: 115 tgctactgtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgc 174
Query: 163 ttggactgaagggagctcc 181
|||||||||||||||||||
Sbjct: 175 ttggactgaagggagctcc 193
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 73.8 bits (37), Expect = 8e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 104 tgctattgtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgct 163
|||||| |||||||||||||||||||||||| | ||||||| |||||||| ||| ||||
Sbjct: 84 tgctatcgtgaatgtgtgaatgatgcgggagct-tatttcatccttctcttgtctctgct 142
Query: 164 tggactgaa 172
|||||||||
Sbjct: 143 tggactgaa 151
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 69.9 bits (35), Expect = 1e-11
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 111 gtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgcttggactg 170
|||| |||||||||||||||||||||| ||| || ||||| || |||||| ||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
Query: 171 aagggagctcc 181
|||||||||||
Sbjct: 178 aagggagctcc 188
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 65.9 bits (33), Expect = 2e-10
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ttaagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgac 60
||||||||||| ||||||||||||||||||| || | ||| ||| ||||| ||||||||
Sbjct: 7 ttaagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgac 65
Query: 61 tcattcattcaaa 73
|||||||| ||||
Sbjct: 66 tcattcatccaaa 78
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 157 ctgtgcttggactgaagggagctcccttta 186
|||| |||||||||||||||||||||||||
Sbjct: 186 ctgtacttggactgaagggagctcccttta 215
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 63.9 bits (32), Expect = 7e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 taagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgact 61
|||||||||| ||||||||||||||||||| || | ||| ||| ||||| |||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggattt-aattagctgccgact 65
Query: 62 cattcattcaaa 73
||||||| ||||
Sbjct: 66 cattcatccaaa 77
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 114 aatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgcttggactgaag 173
|||| ||||||||||||||||| ||||| || || |||| |||| ||||||||||||
Sbjct: 111 aatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactgaag 169
Query: 174 ggagctcccttt 185
||||||||||||
Sbjct: 170 ggagctcccttt 181
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 63.9 bits (32), Expect = 7e-10
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 104 tgctattgtgaatgtgtgaatgatgcgggagataaattt-cat-acttctcttctctgtg 161
||||| ||||| ||||||||||||||||||||||| ||| ||| | ||| || ||||||
Sbjct: 113 tgctactgtgattgtgtgaatgatgcgggagataattttacatcccctct-ttttctgtg 171
Query: 162 cttggactgaagggagctcc 181
||||||||||||||||||||
Sbjct: 172 cttggactgaagggagctcc 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 44 ttgaattatctgccgactcattcattcaa 72
|||||||| ||||||||||||||||||||
Sbjct: 51 ttgaattagctgccgactcattcattcaa 79
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 120 tgaatgatgcgggagataaattt-catacttctcttctctgtgcttggactgaagggagc 178
|||||||||||||||||| ||| ||| | ||| ||||||||||||||||||||||||||
Sbjct: 118 tgaatgatgcgggagatatttttacatccatct-ttctctgtgcttggactgaagggagc 176
Query: 179 tcc 181
|||
Sbjct: 177 tcc 179
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 60.0 bits (30), Expect = 1e-08
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 105 gctattgtgaatgtgtgaatgatgcgggagataaattt-catacttctcttctctgtgct 163
|||| ||||| ||| ||||||||||||||||||| ||| ||| | ||| || || |||||
Sbjct: 114 gctactgtgattgtatgaatgatgcgggagataattttgcatccctctttt-tccgtgct 172
Query: 164 tggactgaagggagctcc 181
||||||||||||||||||
Sbjct: 173 tggactgaagggagctcc 190
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tgaattatctgccgactcattcattcaa 72
|||| |||||||||||||||||||||||
Sbjct: 53 tgaagtatctgccgactcattcattcaa 80
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 147 cttctcttctctgtgcttggactgaagggagctccct 183
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 145 cttcacttctctatgcttggactgaagggagctccct 181
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 157 ctgtgcttggactgaagggagctccctt 184
||||||||||||||||||||||||||||
Sbjct: 146 ctgtgcttggactgaagggagctccctt 173
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 aagagagctctcttcagtccactcatggg 31
||||||||| |||||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatggg 37
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 153 ttctctgtgcttggactgaagggagctcccttt 185
|||||| || |||||||||||||||||||||||
Sbjct: 153 ttctctttgattggactgaagggagctcccttt 185
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 163 ttggactgaagggagctcccttta 186
||||||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctcccttta 180
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctcccttt 185
||||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcccttt 185
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 taagagagctctcttcagtccactcatggg 31
|||||||||| |||| ||||||||||||||
Sbjct: 8 taagagagctttctttagtccactcatggg 37
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 aagagagctctcttcagtccactc 26
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa
Japonica Group
Length = 193
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 aagagagctctcttcagtccactc 26
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 153 ttctctgtgcttggactgaagggagctccct 183
|||||| || |||||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctccct 181
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 153 ttctctgtgcttggactgaagggagctccct 183
|||||| || |||||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctccct 181
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 153 ttctctgtgcttggactgaagggagctccct 183
|||||| || |||||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctccct 181
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccctt 184
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccct 183
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 156 tctgtgcttggactgaagggagctcc 181
|||||| |||||||||||||||||||
Sbjct: 163 tctgtgtttggactgaagggagctcc 188
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 cttggactgaagggagctccct 183
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
