miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 371 bits (187), Expect = e-102
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 ccaaaggagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ccaaaggagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatct 66
Query: 61 catgcattaaggcaatacttgacaagtttttcacagtgaaaatctcaagtttggcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 catgcattaaggcaatacttgacaagtttttcacagtgaaaatctcaagtttggcctggt 126
Query: 121 gcatggtgtgggagcaactccttccctccttcccccacccattggactgaagggagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gcatggtgtgggagcaactccttccctccttcccccacccattggactgaagggagctcc 186
Query: 181 ttctttc 187
|||||||
Sbjct: 187 ttctttc 193
>RF00638;MIR159;AARH01009083.1/25466-25273 3694:Populus
trichocarpa
Length = 194
Score = 79.8 bits (40), Expect = 1e-14
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 gctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgcatt 68
|||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 15 gctccttttagtccaataaggagggctgagaagcggcta-gagctgccatctcatgcatt 73
Query: 69 aaggcaat 76
|||||||
Sbjct: 74 taggcaat 81
>RF00638;MIR159;BABK01007609.1/868-644 34305:Lotus japonicus
Length = 225
Score = 67.9 bits (34), Expect = 5e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 100 aaatctcaagtttggcctggtgcatggtgtgggagcaactccttc-cctccttcccccac 158
|||| |||||||||||| ||||||||| |||||||||||||| | ||| ||| ||||
Sbjct: 131 aaatgtcaagtttggccaggtgcatggcgtgggagcaactccaccgcctgcttagcccag 190
Query: 159 ccattggactgaagggagctcc 180
|||||||| |||||||||||||
Sbjct: 191 ccattggattgaagggagctcc 212
Score = 56.0 bits (28), Expect = 2e-07
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 5 aggagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatg 64
|||||||||||||| ||||||| | |||||| || || ||| |||||||| |||||||||
Sbjct: 11 aggagctcctttcaatccaatacgaagggctgaggagaggc-aagagctgtcatctcatg 69
Query: 65 catt 68
||||
Sbjct: 70 catt 73
>RF00638;MIR159;ABIM01001714.1/11958-11721 3649:Carica papaya
(papaya)
Length = 238
Score = 65.9 bits (33), Expect = 2e-10
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 120 tgcatggtgtgggagcaactccttccc--tccttcccccacccattggactgaagggagc 177
||||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||||||
Sbjct: 163 tgcatggagtgggagcaactccttccccatactttgcccgcccattggactgaagggagc 222
Query: 178 tcct 181
||||
Sbjct: 223 tcct 226
>RF00638;MIR159;EU526570.1/508-238 49390:Coffea canephora
Length = 271
Score = 61.9 bits (31), Expect = 3e-09
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 120 tgcatggtgtgggagcaactcct-tccctc-cttcccccacccattggactgaagggagc 177
||||||||||||||||||||||| || ||| ||| ||| ||||||||||||||||||||
Sbjct: 196 tgcatggtgtgggagcaactcctgtcgctcactttgcccgcccattggactgaagggagc 255
Query: 178 tcc 180
|||
Sbjct: 256 tcc 258
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttctttc 187
||||||||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccttctttc 186
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttctttc 187
||||||||||||||||||||||||||
Sbjct: 172 ttggactgaagggagctccttctttc 197
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttctttc 187
||||||||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccttctttc 173
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttcttt 186
|||||||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctccttcttt 194
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttcttt 186
|||||||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctccttcttt 194
>RF00638;MIR159;AM434575.1/6317-6094 29760:Vitis vinifera
Length = 224
Score = 48.1 bits (24), Expect = 4e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 7 gagctcctttcagtccaatatggagggcttagaagcggcaaagagctgccatctcatgca 66
|||||||||| ||||||||| ||||||| || ||||| | ||||||||||||||||||
Sbjct: 13 gagctccttttagtccaataaagagggctgaggggcggcca-gagctgccatctcatgca 71
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 154 cccacccattggactgaagggagctcc 180
||||| |||||||||||||||||||||
Sbjct: 185 cccactcattggactgaagggagctcc 211
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttc 183
||||||||||||||||||||||
Sbjct: 175 ttggactgaagggagctccttc 196
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttc 183
||||||||||||||||||||||
Sbjct: 173 ttggactgaagggagctccttc 194
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccttctttc 187
|||||||||||||||||||| |||||
Sbjct: 153 ttggactgaagggagctcctcctttc 178
