miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtgaagatcattgatatattattgtccaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccgtgaagatcattgatatattattgtccaaacaaa 69
Query: 61 acatatgtatagtctttagtggcgctatccatcctgagtttcacaggt 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 acatatgtatagtctttagtggcgctatccatcctgagtttcacaggt 117
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttcac 104
|||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttcac 88
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 agtggcgctatccatcctgagttt 101
||||||||||||||||||||||||
Sbjct: 79 agtggcgctatccatcctgagttt 102
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 70 tagtctttagtggcgctatccatcctgagtt 100
||||| |||||||||||||| ||||||||||
Sbjct: 88 tagtcattagtggcgctatctatcctgagtt 118
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 85 gcgctatccatcctgagtttca 106
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 92 gcgctatccatcctgagtttca 113
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 gtggcgctatccatcctgagtttcac 104
||||||||||| ||||||||||||||
Sbjct: 110 gtggcgctatctatcctgagtttcac 135
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tagtggcgctatccatcctgagtttcac 104
||||||||||||| ||||||||||||||
Sbjct: 95 tagtggcgctatctatcctgagtttcac 122
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtgaa 31
|||| ||||||||||||||||||||| ||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatgaa 40
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccgtgaagatca 36
|||| ||||||||||||||||||||| ||| |||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatgatgatca 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tggcgctatccatcctgagtttca 103
||||||||||||||||||||||||
Sbjct: 64 tggcgctatccatcctgagtttca 87
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgcc 35
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 105 gcgctatccatcctgagtttca 126
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
|||| |||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 gcgctatccatcctgagtttca 103
||||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagtttca 92
