miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 200 bits (101), Expect = 3e-51
Identities = 115/122 (94%)
Strand = Plus / Plus
Query: 1 ctaataagctcaggagggatagcgccatggatggatatgtgtttttatgaatatgactcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctaataagctcaggagggatagcgccatggatggatatgtgtttttatgaatatgactcg 69
Query: 61 tcttttcttggcttgcnnnnnnnatctcttctatagcgctatccatcctgagtttcattg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcttttcttggcttgctttttttatctcttctatagcgctatccatcctgagtttcattg 129
Query: 121 gt 122
||
Sbjct: 130 gt 131
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatggatg 33
||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatg 42
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 87 tcttctatagcgctatccatcctgagtttcat 118
|||||| | |||||||||||||||||||||||
Sbjct: 62 tcttctcttgcgctatccatcctgagtttcat 93
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattggt 122
|||||||||||||||||||||||||||
Sbjct: 92 gcgctatccatcctgagtttcattggt 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcca 27
|||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgcca 36
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatgg 30
||||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttca 117
||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttca 87
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana (thale
cress)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattgg 121
||||||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttcattgg 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatgg 30
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccatg 38
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccatg 29
|||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccatg 38
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatg 29
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccat 28
||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 87 tcttctatagcgctatccatcctgagtttcat 118
|||||| | |||||||||||||||||||||||
Sbjct: 76 tcttctcttgcgctatccatcctgagtttcat 107
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttcattgg 121
||||| ||||||||||||||||||||
Sbjct: 64 gcgctgtccatcctgagtttcattgg 89
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgcc 26
||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 gcgctatccatcctgagtttca 117
||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttca 112
