miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ctggagttcccctggccgcttcattggggctattatatacccttaattatacatgtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggagttcccctggccgcttcattggggctattatatacccttaattatacatgtgtta 67
Query: 61 ttcctgccctactgaagtgtttgggggaactctaggt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttcctgccctactgaagtgtttgggggaactctaggt 104
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 68 cctactgaagtgtttgggggaactc 92
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 69 cctactgaagtgtttgggggaactc 93
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 tgccctactgaagtgtttgggggaactct 93
|||||| ||||||||||||||||||||||
Sbjct: 54 tgccctgctgaagtgtttgggggaactct 82
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 tgccctactgaagtgtttgggggaactct 93
||||||||| |||||||||||||||||||
Sbjct: 57 tgccctactaaagtgtttgggggaactct 85
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 cctactgaagtgtttgggggaactc 92
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tgaagtgtttgggggaactctaggt 97
|||||||||||||||||||||||||
Sbjct: 80 tgaagtgtttgggggaactctaggt 104
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tgaagtgtttgggggaactctaggt 97
|||||||||||||||||||||||||
Sbjct: 90 tgaagtgtttgggggaactctaggt 114
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tgaagtgtttgggggaactctaggt 97
|||||||||||||||||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggt 107
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tgaagtgtttgggggaactctaggt 97
|||||||||||||||||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggt 107
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 tactgaagtgtttgggggaactct 93
||||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactct 81
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 tactgaagtgtttgggggaactct 93
||||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactct 81
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ctactgaagtgtttgggggaactc 92
||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactc 85
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ctactgaagtgtttgggggaactc 92
||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactc 81
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tgccctactgaagtgtttgggggaactc 92
|||||| |||||||||||||||||||||
Sbjct: 58 tgccctgctgaagtgtttgggggaactc 85
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tgccctactgaagtgtttgggggaactc 92
|||||| |||||||||||||||||||||
Sbjct: 57 tgccctgctgaagtgtttgggggaactc 84
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactct 93
|||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactct 70
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactct 93
|||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactct 70
>RF00451;mir-395;FM164151.1/264-375 3702:Arabidopsis thaliana (thale
cress)
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactctaggt 97
||||||||||||||||| |||||||||
Sbjct: 81 actgaagtgtttggggggactctaggt 107
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactct 93
|||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactct 105
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactct 93
|||||||||||||||||||||||
Sbjct: 55 actgaagtgtttgggggaactct 77
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tactgaagtgtttgggggaactc 92
|||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactc 81
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tactgaagtgtttgggggaactc 92
|||||||||||||||||||||||
Sbjct: 60 tactgaagtgtttgggggaactc 82
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactc 92
||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactc 83
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactc 92
||||||||||||||||||||||
Sbjct: 69 actgaagtgtttgggggaactc 90
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactc 92
||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactc 89
>RF00451;mir-395;AASG02002767.1/22656-22574 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 ccctactgaagtgtttggggga 88
||||||||||||||||||||||
Sbjct: 49 ccctactgaagtgtttggggga 70
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 actgaagtgtttgggggaactc 92
||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactc 89
