miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 ctagagttcccttgagcacttcactgggatgaaaaaaggtccagtcttccttcctactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctagagttcccttgagcacttcactgggatgaaaaaaggtccagtcttccttcctactga 67
Query: 61 agtgtttgggggaactcctggt 82
||||||||||||||||||||||
Sbjct: 68 agtgtttgggggaactcctggt 89
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 cttcctactgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggt 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctagagttcccttgagcacttcactggg 28
||||||||||||||| ||||||||||||
Sbjct: 8 ctagagttcccttgaccacttcactggg 35
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 cttcctactgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||||||||||||||
Sbjct: 57 cttcctactgaagtgtttgggggaactcctggt 89
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 cttcctactgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||||||||||||||
Sbjct: 51 cttcctactgaagtgtttgggggaactcctggt 83
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 cttcctactgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||||||||||||||
Sbjct: 51 cttcctactgaagtgtttgggggaactcctggt 83
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 ttcctactgaagtgtttgggggaactcctggt 82
||||||||||||||||||||||||||||||||
Sbjct: 66 ttcctactgaagtgtttgggggaactcctggt 97
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 ttcctactgaagtgtttgggggaactcctggt 82
||||||||||||||||||||||||||||||||
Sbjct: 67 ttcctactgaagtgtttgggggaactcctggt 98
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ctagagttcccttgagcacttcactggga 29
|||||||||||||||||||||||||||||
Sbjct: 8 ctagagttcccttgagcacttcactggga 36
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 51 ttcctactgaagtgtttgggggaactcctggt 82
|||| |||||||||||||||||||||||||||
Sbjct: 63 ttcccactgaagtgtttgggggaactcctggt 94
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 56.0 bits (28), Expect = 7e-08
Identities = 69/82 (84%), Gaps = 8/82 (9%)
Strand = Plus / Plus
Query: 1 ctagagttcccttgagcacttcactgggatgaaaaaaggtccagtcttccttcctactga 60
||||||||||||||| ||||||||||||| ||||| |||| | ||||| |||||
Sbjct: 8 ctagagttcccttgaacacttcactgggacgaaaa----tcca----ttcttccaactga 59
Query: 61 agtgtttgggggaactcctggt 82
||||||||||||||||| ||||
Sbjct: 60 agtgtttgggggaactcttggt 81
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 ctactgaagtgtttgggggaactcctgg 81
||||||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 ttcctactgaagtgtttgggggaactcc 78
||||||||||||||||||||||||||||
Sbjct: 52 ttcctactgaagtgtttgggggaactcc 79
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tactgaagtgtttgggggaactcctggt 82
||||||||||||||||||||||||||||
Sbjct: 60 tactgaagtgtttgggggaactcctggt 87
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactcctggt 94
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana
(thale cress)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 ctactgaagtgtttgggggaactcc 78
|||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactcc 86
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 cctactgaagtgtttgggggaactc 77
|||||||||||||||||||||||||
Sbjct: 75 cctactgaagtgtttgggggaactc 99
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcctgg 81
|||||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcctgg 84
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcctgg 81
|||||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcctgg 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcctgg 81
|||||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcctgg 89
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tgaagtgtttgggggaactcctgg 81
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcctgg 108
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tactgaagtgtttgggggaactcc 78
||||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactcc 82
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tactgaagtgtttgggggaactc 77
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactcctggt 82
|||||||||||||||||||||| ||||
Sbjct: 48 actgaagtgtttgggggaactcttggt 74
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tactgaagtgtttgggggaactc 77
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana
(thale cress)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactcc 78
|||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactcc 84
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactcc 78
|||||||||||||||||||||||
Sbjct: 69 actgaagtgtttgggggaactcc 91
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcct 79
|||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcct 86
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcc 78
||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcc 86
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactc 77
||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 actgaagtgtttgggggaactc 77
||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactc 104
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctgaagtgtttgggggaactcc 78
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
