miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;AASG02004288.1/19323-19455 3988:Ricinus communis
(castor bean)
Length = 133
Score = 222 bits (112), Expect = 1e-57
Identities = 126/133 (94%)
Strand = Plus / Plus
Query: 12 agtgcagcgttgatgaattcccctacatgacatatttctgttggttaattcattaccaat 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgcagcgttgatgaattcccctacatgacatatttctgttggttaattcattaccaat 60
Query: 72 atcccttctttnnnnnnngaagtaaacctttttgggaatagatggttttggatgatttca 131
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcccttctttaaaaaaagaagtaaacctttttgggaatagatggttttggatgatttca 120
Query: 132 ccagcgctgcatt 144
|||||||||||||
Sbjct: 121 ccagcgctgcatt 133
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
deltoides
Length = 120
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 126 atttcaccagcgctgcattcaatcatgttttt 157
||||||||||||||||||||||||||||||||
Sbjct: 88 atttcaccagcgctgcattcaatcatgttttt 119
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatgaa 28
||||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
Length = 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 126 atttcaccagcgctgcattcaatcatgttttt 157
|||||||||||||||||||||| |||||||||
Sbjct: 82 atttcaccagcgctgcattcaaccatgttttt 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 cattgagtgcagcgttgatgaa 28
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatgaa 28
||||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatga 27
|||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatga 32
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 aacatcattgagtgcagcgttgatg 26
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatgaa 28
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 aaacatcattgagtgcagcgttgatgaa 28
|||||| |||||||||||||||||||||
Sbjct: 6 aaacattattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 catcattgagtgcagcgttgatga 27
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
