miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 250 bits (126), Expect = 4e-66
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatgtggacattcttagctatatatacccttatcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctacaggagcgacctgagaatcacatgtggacattcttagctatatatacccttatcatc 67
Query: 61 ttctcttattttgggtttattgtactttggtgttctttcatgtgttctcaggtcgcccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttctcttattttgggtttattgtactttggtgttctttcatgtgttctcaggtcgcccct 127
Query: 121 gccggg 126
||||||
Sbjct: 128 gccggg 133
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 97 ttcatgtgttctcaggtcgcccctgccggg 126
||||||||||||||||||||||||||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgccggg 81
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 94 tctttcatgtgttctcaggtcgcccctgccggg 126
|||||| ||||||||||||||||||||||||||
Sbjct: 51 tctttcgtgtgttctcaggtcgcccctgccggg 83
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 99 catgtgttctcaggtcgcccctgccggg 126
||||||||||||||||||||||||||||
Sbjct: 49 catgtgttctcaggtcgcccctgccggg 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatgtgg 30
||||||||||||||||| ||||||||||||
Sbjct: 8 ctacaggagcgacctga-aatcacatgtgg 36
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccctgc 122
|||||||||||||||||||||||||
Sbjct: 64 tcatgtgttctcaggtcgcccctgc 88
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tcatgtgttctcaggtcgcccctgc 122
|||||||||||||||||||||||||
Sbjct: 57 tcatgtgttctcaggtcgcccctgc 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatg 27
||||||||| |||||||||||||||||
Sbjct: 8 ctacaggagtgacctgagaatcacatg 34
>RF00695;MIR398;CU225561.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 tgttctcaggtcgcccctgccggg 126
||||||||||||||||||||||||
Sbjct: 53 tgttctcaggtcgcccctgccggg 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 1 ctacaggagcgacctgagaatcacatgtgg 30
||||||||||||||||| ||||||||||||
Sbjct: 8 ctacaggagcgacctga-aatcacatgtgg 36
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 tttcatgtgttctcaggtcgcccctgc 122
||||||||||||||||||| |||||||
Sbjct: 82 tttcatgtgttctcaggtcacccctgc 108
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 tttcatgtgttctcaggtcgcccctgc 122
||||||||||||||||||| |||||||
Sbjct: 81 tttcatgtgttctcaggtcacccctgc 107
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 96 tttcatgtgttctcaggtcgcccctgc 122
||||||||||||||||||| |||||||
Sbjct: 80 tttcatgtgttctcaggtcacccctgc 106
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcgcccctgc 122
||||||||||||||||||||||
Sbjct: 98 tgtgttctcaggtcgcccctgc 119
>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tctttcatgtgttctcaggtcgcccc 119
|||| |||||||||||||||||||||
Sbjct: 91 tcttgcatgtgttctcaggtcgcccc 116
