miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 tctctagtttgtgtgtgaatctaattcaggccatccatgtcagggccctactaatcctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tctctagtttgtgtgtgaatctaattcaggccatccatgtcagggccctactaatcctat 65
Query: 61 cccatggtgttagattcacgcacaaactcgtgatc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 66 cccatggtgttagattcacgcacaaactcgtgatc 100
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 59 atcccatggtgttagattcacgcacaaactcgtgatc 95
|||| ||||||||||||||||||||||||||||||||
Sbjct: 67 atccaatggtgttagattcacgcacaaactcgtgatc 103
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 gttagattcacgcacaaactcgtgatc 95
|||||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtgatc 110
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 66 ggtgttagattcacgcacaaactcgtgatc 95
||||||||||||||||||||||||| ||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatc 81
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 66 ggtgttagattcacgcacaaactcgtgatc 95
||||||||||||||||||||||||| ||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatc 81
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 59 atcccatggtgttagattcacgcacaaactcgtgatc 95
|||| |||| |||||||||||||||||||||| ||||
Sbjct: 58 atccaatggcgttagattcacgcacaaactcgcgatc 94
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 atggtgttagattcacgcacaaactcgt 91
||||| ||||||||||||||||||||||
Sbjct: 72 atggtcttagattcacgcacaaactcgt 99
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
pekinensis
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ttagattcacgcacaaactcgt 91
||||||||||||||||||||||
Sbjct: 69 ttagattcacgcacaaactcgt 90
>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
cress)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ttagattcacgcacaaactcgt 91
||||||||||||||||||||||
Sbjct: 88 ttagattcacgcacaaactcgt 109
>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
Length = 131
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ttagattcacgcacaaactcgt 91
||||||||||||||||||||||
Sbjct: 101 ttagattcacgcacaaactcgt 122
