miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctgaa 42
|||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctgaa 35
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatcagaacc 63
||||||| ||||||||||||||||||||||||| | | ||||||| || | || |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaac 60
Query: 64 atgaatcgatcgataaacctctgcatccagc 94
||||| |||||||||||||||||||||||||
Sbjct: 61 atgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 65.9 bits (33), Expect = 9e-11
Identities = 78/91 (85%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctg---aatcgttgtttaacatcaga-acc 63
||||||| ||||||||||||||||||||||||| | | | ||| || |||| | | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcacagaac 60
Query: 64 atgaatcgatcgataaacctctgcatccagc 94
|||||||||||||||||||||||||||||||
Sbjct: 61 atgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccagc 94
||||||||||||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctg 40
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctgaat 43
|||||||||||||||||||||||||| |||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaat 36
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccagc 94
|||||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccagc 94
|||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 catgaatcgatcgataaacctctgcatccagc 94
||||||| ||||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 ctggatgcagcggttcatcgatctcttcctg 40
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 cactggatgcagcggttcatcgatctcttcctgaa 42
||||||| |||||||||||||||||| ||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccagc 94
|||||| ||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcgatcgataaacctctgcatccag 93
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
