miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 139 bits (70), Expect = 7e-33
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgcaagtctcttggatctcaaatgccactgaac 60
|||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgcaatgttcttggctctcaaatgccagtgaac 60
Query: 61 cctttgcacgtgctccccttctccaacacgggtt 94
|||||||||||||||||||||||||||| |||||
Sbjct: 61 cctttgcacgtgctccccttctccaacatgggtt 94
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgca 31
|||||||||||||||||||||||||||||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgca 31
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 ttgcacgtgctccccttctccaacacgggtt 94
||||||||||||||||||||||||| |||||
Sbjct: 88 ttgcacgtgctccccttctccaacatgggtt 118
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 ctttgcacgtgctccccttctccaacacgggtt 94
||||||||||||||||||||||||||| |||||
Sbjct: 53 ctttgcacgtgctccccttctccaacatgggtt 85
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agctccttgttggagaagcagggcacgtgcaa 32
|||||| |||||||||||||||||||||||||
Sbjct: 1 agctccctgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 ttgcacgtgctccccttctccaacacgggttt 95
||||||||||||||||||||||||| ||||||
Sbjct: 53 ttgcacgtgctccccttctccaacatgggttt 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcaag 33
|||| |||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaag 33
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max (soybean)
Length = 112
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 tttgcacgtgctccccttctccaacacg 90
||||||||||||||||||||||||||||
Sbjct: 80 tttgcacgtgctccccttctccaacacg 107
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggcacgtgcaa 32
|||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcaa 32
|||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 ttgcacgtgctccccttctccaacacgggtt 94
||||||||||||||||||||||||| |||||
Sbjct: 55 ttgcacgtgctccccttctccaacatgggtt 85
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcaa 32
|||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 ctccttgttggagaagcagggcacgtgcaa 32
|||| |||||||||||||||||||||||||
Sbjct: 3 ctccatgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tttgcacgtgctccccttctccaaca 88
||||||||||||||||||||||||||
Sbjct: 80 tttgcacgtgctccccttctccaaca 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 tgcacgtgctccccttctccaacacgggtt 94
|||||||||||||||||||||||| |||||
Sbjct: 54 tgcacgtgctccccttctccaacatgggtt 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgca 31
|||| |||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgca 31
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 64 ttgcacgtgctccccttctccaacacgggttt 95
||||||||||||| ||||||||||| ||||||
Sbjct: 55 ttgcacgtgctccacttctccaacatgggttt 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcaa 32
|||| ||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaa 32
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 ccttgttggagaagcagggcacgtgcaa 32
||||| ||||||||||||||||||||||
Sbjct: 5 ccttgctggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgttggagaagcagggcacgtgca 31
||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC226040.1/15354-15265 4641:Musa acuminata
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ccttgttggagaagcagggcacgtgca 31
|||||||||||||||||| ||||||||
Sbjct: 5 ccttgttggagaagcaggtcacgtgca 31
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gttggagaagcagggcacgtgca 31
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa
Indica Group
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cttgttggagaagcagggcacgtgcaa 32
|||||||||||||||||| ||||||||
Sbjct: 6 cttgttggagaagcagggtacgtgcaa 32
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ctttgcacgtgctccccttctccaac 87
|||||||||||||||||| |||||||
Sbjct: 60 ctttgcacgtgctcccctcctccaac 85
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcaa 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
