miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 89.7 bits (45), Expect = 8e-18
Identities = 88/102 (86%), Gaps = 4/102 (3%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctagctttggttagtgggagcgagagagtgctaa 72
||||||||||||||||||||||||||||| ||||||||| ||| ||| || ||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctatctttggtta----gagaaagaaaggactaa 61
Query: 73 ccctcactaggtcatgctgtgctagcctcactccttcctatt 114
|||| ||||||||||||||| |||||||||||||||||||
Sbjct: 62 ccctagctaggtcatgctgtgacagcctcactccttcctatt 103
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 70 taaccctcactaggtcatgctgtgctagcctcactccttcctatt 114
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttcctatt 334
Score = 79.8 bits (40), Expect = 8e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 8 acaaaggaaaaagtgaagctgccagcatgatctagctttggtta 51
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 acaaaggaaaaagtgaagctgccagcatgatctaggtttggtta 44
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 8 acaaaggaaaaagtgaagctgccagcatgatctagctttggttag 52
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaagggaaaaagtgaagctgccagcatgatctagctttggttag 45
Score = 63.9 bits (32), Expect = 5e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 67 tgctaaccctcactaggtcatgctgtgctagcctcactccttcctatt 114
|||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct: 75 tgctaaccctgactaggtcatgctgcgacagcctcactccttcctatt 122
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 77.8 bits (39), Expect = 3e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 8 acaaaggaaaaagtgaagctgccagcatgatctagctttggttagtg 54
|||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 acaagggaaaaggtgaagctgccagcatgatctagctttggttagtg 47
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 65 agtgctaaccctcactaggtcatgctgtgctagcctcactccttcctatt 114
|||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 94 agtgctaaccctagctaggtcatgctctgacagcctcactccttcctatt 143
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 9 caaaggaaaaagtgaagctgccagcatgatctagct 44
||||||||||||||||||||||||||||||||||||
Sbjct: 2 caaaggaaaaagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 8 acaaaggaaaaagtgaagctgccagcatgatctagctttggttag 52
|||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct: 1 acaagggaaaaggtgaagctgccagcatgatctatctttggttag 45
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 8 acaaaggaaaaagtgaagctgccagcatgatctagctttggtta 51
|||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 1 acaagggaacaagtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatctagctttgg 48
|||| |||||||||||||||||||||||||||||||
Sbjct: 6 ggaataagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctagctttggtt 50
||||||||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctagct 44
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctagct 44
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctagct 44
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatctagct 44
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ggaaaaagtgaagctgccagcatgatcta 41
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gaaaaagtgaagctgccagcatgatcta 41
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 agtgaagctgccagcatgatcta 41
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctag 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgaagctgccagcatgatcta 41
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
