miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 59 agacgagccgaatcaatatcactcttgtttgctt 92
||||||||||||||||||||||||||||||||||
Sbjct: 80 agacgagccgaatcaatatcactcttgtttgctt 113
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 59 agacgagccgaatcaatatcactcttgtttgctt 92
|||||||||||||||||||||||||||| |||||
Sbjct: 76 agacgagccgaatcaatatcactcttgtatgctt 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tagacacggcgtgatattggtacggctcatctt 33
||||||||| ||||||||||| |||||||||||
Sbjct: 9 tagacacggtgtgatattggtccggctcatctt 41
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 agacgagccgaatcaatatcactcttgt 86
||||||||||||||||||||||||||||
Sbjct: 71 agacgagccgaatcaatatcactcttgt 98
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 62 cgagccgaatcaatatcactcttgtttgctt 92
||||||||||||||||||||||||| |||||
Sbjct: 85 cgagccgaatcaatatcactcttgtatgctt 115
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 59 agacgagccgaatcaatatcactcttgtttgctt 92
|||||||||||| ||||||||||||||| |||||
Sbjct: 67 agacgagccgaaccaatatcactcttgtatgctt 100
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 cgagccgaatcaatatcactcttgt 86
|||||||||||||||||||||||||
Sbjct: 89 cgagccgaatcaatatcactcttgt 113
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 gagacgagccgaatcaatatcactc 82
|||||||||||||||||||||||||
Sbjct: 76 gagacgagccgaatcaatatcactc 100
>RF00692;MIR171_2;CU571241.2/65608-65725 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 agacgagccgaatcaatatcactc 82
||||||||||||||||||||||||
Sbjct: 81 agacgagccgaatcaatatcactc 104
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 gagccgaatcaatatcactcttgt 86
||||||||||||||||||||||||
Sbjct: 73 gagccgaatcaatatcactcttgt 96
