miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 79.8 bits (40), Expect = 1e-14
Identities = 101/118 (85%), Gaps = 5/118 (4%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcacaagcttcaggggtt---ttttgtttggggtggtccctta 78
||||||||||||||||||||||||||| | ||| | || ||||||||||||||||| |
Sbjct: 12 tggagcatcatcaagattcacaagctttaaggggtggattgtgtttggggtggtccctaa 71
Query: 79 ttgctcccaaatgaattaagccctttgatatgggaatcttgatgatgctgcagcagca 136
||||||| | || |||| || ||||||| || |||||||||||||||||||| ||||
Sbjct: 72 ttgctcc-atatcaattt-gctctttgatttgagaatcttgatgatgctgcagtagca 127
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 99 ccctttgatatgggaatcttgatgatgctgcagcagcaataaa 141
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 ccctttgatatgggaatcttgatgatgctgcagcggcaataaa 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 ttgcagatggagcatcatcaagattcacaa 44
|||| |||||||||||||||||||||||||
Sbjct: 5 ttgctgatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 97 agccctttgatatgggaatcttgatgatgctgcagcagcaataaa 141
|||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 100 agccctttgaattgggaatcttgatgatgctgcagcggcaataaa 144
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 atggagcatcatcaagattcacaagctt 48
||||||||||||||||||||||||||||
Sbjct: 11 atggagcatcatcaagattcacaagctt 38
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 101 ctttgatatgggaatcttgatgatgctgcagcagcaataaa 141
||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 100 ctttgatgtgggaatcttgatgatgctgcagcggcaataaa 140
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 15 ttgcagatggagcatcatcaagattcacaag 45
|||| ||||||||||||||||||||||||||
Sbjct: 5 ttgcggatggagcatcatcaagattcacaag 35
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 107 tatgggaatcttgatgatgctgcagcagcaataaa 141
|||||||||||||||||||||||||| ||||||||
Sbjct: 167 tatgggaatcttgatgatgctgcagcggcaataaa 201
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 ttgcagatggagcatcatcaagattcacaa 44
|||| |||||||||||||||||||||||||
Sbjct: 5 ttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 100 cctttgatatgggaatcttgatgatgctgcagcagca 136
||||| ||||||||||||||||||||||||| |||||
Sbjct: 94 cctttcatatgggaatcttgatgatgctgcatcagca 130
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| ||||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| ||||||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgcagcagcaa 137
|||||||||||||||||||||| ||||||
Sbjct: 65 tgggaatcttgatgatgctgcatcagcaa 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 ttgcagatggagcatcatcaagattcacaag 45
||||||||| |||||||| ||||||||||||
Sbjct: 5 ttgcagatgcagcatcattaagattcacaag 35
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgcagcagcaa 137
|||||||||||||||||||||| ||||||
Sbjct: 93 tgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 tatgggaatcttgatgatgctgcagcagcaat 138
|||| ||||||||||||||||||||| |||||
Sbjct: 89 tatgagaatcttgatgatgctgcagctgcaat 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcacaa 44
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 ctgattgcagatggagcatcatcaagattc 40
|||||||||| || ||||||||||||||||
Sbjct: 123 ctgattgcagctgcagcatcatcaagattc 94
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgcagc 132
||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagc 129
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tatgggaatcttgatgatgctgca 130
||||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgca 172
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacaagctt 48
|||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacaagctt 38
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 106 atatgggaatcttgatgatgctgcagcagcaa 137
||||| ||||||||||||||||||| ||||||
Sbjct: 108 atatgagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 atgggaatcttgatgatgctgca 130
|||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgca 120
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaat 138
||||||||||||||||||||| |||||
Sbjct: 84 gaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 atgggaatcttgatgatgctgca 130
|||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgca 123
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaat 138
||||||||||||||||||| |||||||
Sbjct: 67 gaatcttgatgatgctgcaccagcaat 93
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| |||| |||||
Sbjct: 101 gaatcttgatgatgctgcatcagccataaa 130
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcaca 43
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| | ||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| |||| |||||
Sbjct: 100 gaatcttgatgatgctgcatcagccataaa 129
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| | ||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;CR954190.2/85410-85533 3880:Medicago truncatula
(barrel medic)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 tgattgcagatggagcatcatcaagattcacaag 45
||||||| | ||||||||||||| ||||||||||
Sbjct: 2 tgattgccggtggagcatcatcaggattcacaag 35
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaa 137
||||||||||||||||||| ||||||
Sbjct: 139 gaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaataaa 141
||||||||||||||||||| | ||||||||
Sbjct: 83 gaatcttgatgatgctgcatcggcaataaa 112
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaa 137
||||||||||||||||||| ||||||
Sbjct: 93 gaatcttgatgatgctgcatcagcaa 118
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgca 179
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaa 137
||||||||||||||||||| ||||||
Sbjct: 83 gaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcagcagcaa 137
||||||||||||||||||| ||||||
Sbjct: 82 gaatcttgatgatgctgcaccagcaa 107
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgggaatcttgatgatgctgca 130
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
