miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 214 bits (108), Expect = 4e-55
Identities = 165/182 (90%), Gaps = 4/182 (2%)
Strand = Plus / Plus
Query: 16 ggtaagagagctttcttcagtccactcatgggtgacagtaagatt-caattagctgccga 74
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 6 ggtaagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctga 65
Query: 75 ctcattcatccaaatgttgagtgtaagcga---ataaatatactcagcagatgagtgaat 131
|||||||||||||||||||||| || | | | ||||||||| || ||||||||||
Sbjct: 66 ctcattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaat 125
Query: 132 gatgcgggagacaaattgaatcttaagtttcctgtacttggactgaagggagctcccttt 191
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 126 gatgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttt 185
Query: 192 tc 193
||
Sbjct: 186 tc 187
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 176 bits (89), Expect = 8e-44
Identities = 156/176 (88%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 18 taagagagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactc 77
|||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactc 66
Query: 78 attcatccaaatgttgagtgtaag--cgaataaatatactcagcagatgagtgaatgatg 135
|||||||||||| ||||| ||| | | | || ||| ||| | ||||||||||||||
Sbjct: 67 attcatccaaatactgagttaaaggacaaggagat-tacccagtaaatgagtgaatgatg 125
Query: 136 cgggagacaaattgaatcttaagtttcctgtacttggactgaagggagctcccttt 191
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 126 cgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctcccttt 181
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 131 bits (66), Expect = 4e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 145 atgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaaggg 204
Query: 182 agctcccttt 191
||||||||||
Sbjct: 205 agctcccttt 214
Score = 111 bits (56), Expect = 4e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 18 taagagagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactc 77
|||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactc 67
Query: 78 attcatccaaat 89
||||||||||||
Sbjct: 68 attcatccaaat 79
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 131 bits (66), Expect = 4e-30
Identities = 149/173 (86%), Gaps = 9/173 (5%)
Strand = Plus / Plus
Query: 19 aagagagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgact-c 77
||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcc 68
Query: 78 attcatccaaatgttgagtgtaagcgaataaatatactcagcagatgagtgaatgatgcg 137
|||||||||||| || || |||| || ||| ||| | |||| |||||||||||
Sbjct: 69 attcatccaaatactgtgt-taag-ga------ctacccagtaaatgattgaatgatgcg 120
Query: 138 ggagacaaattgaatcttaagtttcctgtacttggactgaagggagctccctt 190
|||||||||||| |||||||| | ||||| |||||||||||||||||||||||
Sbjct: 121 ggagacaaattggatcttaagctccctgtgcttggactgaagggagctccctt 173
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 129 bits (65), Expect = 2e-29
Identities = 142/170 (83%), Gaps = 12/170 (7%)
Strand = Plus / Plus
Query: 20 agagagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcat 79
|||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 80 tcatccaaatgttgagtgtaagcgaataaatatactcagcagatgagtgaatgatgcggg 139
||||||||||| ||| ||| || |||| | ||||||||||||||||||
Sbjct: 70 tcatccaaatgctgaatgtg------------tattcagtaaatgagtgaatgatgcggg 117
Query: 140 agacaaattgaatcttaagtttcctgtacttggactgaagggagctccct 189
|||||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct: 118 agacaaattgtatcttaagcttcctgttattggactgaagggagctccct 167
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 77.8 bits (39), Expect = 5e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 114 ctcagcagatgagtgaatgatgcgggag-acaaattgaatcttaagtttcctgtacttgg 172
||||||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 173 actgaagggagctcc 187
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 73.8 bits (37), Expect = 9e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
|||||||||| ||||||| |||||| || || | ||||||| ||||||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 83 tccaaatgttgag 95
|||||||||||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 75.8 bits (38), Expect = 2e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
|||| ||| |||||||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct: 110 atgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaaggg 169
Query: 182 agctcccttt 191
||||||||||
Sbjct: 170 agctcccttt 179
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 63.9 bits (32), Expect = 8e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
|||| ||||||||||| |||||||||||| |||| | || || | ||||||||||||||
Sbjct: 114 atgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaaggg 173
Query: 182 agctccct 189
||||||||
Sbjct: 174 agctccct 181
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 aagagagctttcttcagtccactcatgg 46
||||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttcttcggtccactcatgg 36
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 gattcaattagctgccgactcattcatccaaat 89
||||||||||||| |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 163 ctgtacttggactgaagggagctccctttt 192
|||| |||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccctttt 190
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 taagagagctttcttcagtccactcatggg 47
|||||||||| |||||||||||||||||||
Sbjct: 8 taagagagctctcttcagtccactcatggg 37
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 163 ctgtacttggactgaagggagctcccttt 191
|||| ||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctcccttt 191
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 ttggactgaagggagctcccttt 191
|||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctcccttt 185
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 caattagctgccgactcattcatccaaat 89
||||||||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 163 ctgtacttggactgaagggagctcccttt 191
|||| ||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctcccttt 175
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattcatccaaa 88
||||||||||||||||||||| ||||
Sbjct: 42 attagctgccgactcattcattcaaa 67
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccctttt 192
|||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctttt 183
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 aagagagctttcttcagtccactcatgg 46
|||||||||| |||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatgg 36
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccctttt 192
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 aagagagctttcttcagtccactcatgg 46
||||||||| ||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactcatgg 36
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 taagagagctttcttcagtccactcatgg 46
||||||||||| |||||||||||||||||
Sbjct: 8 taagagagcttccttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 163 ctgtacttggactgaagggagctccctt 190
|||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattcatccaaa 88
||||||||||||||||||||| ||||
Sbjct: 54 attagctgccgactcattcattcaaa 79
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccctt 190
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccct 189
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 aattagctgccgactcattcat 83
||||||||||||||||||||||
Sbjct: 54 aattagctgccgactcattcat 75
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccct 189
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
