miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 64
Query: 61 tctcttgcgctatccatcctgagtttcatggcttctatct 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tctcttgcgctatccatcctgagtttcatggcttctatct 104
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 54 ttgatcttctcttgcgctatccatcctgagtttcatggcttct 96
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ttgatcttctcttgcgctatccatcctgagtttcatggcttct 114
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccat 33
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/88 (85%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
||||||||| ||||||||||||||||||||||||| | |||| | |||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatgg-----cgggtcttgaatcttgatct 59
Query: 61 tctcttgcgctatccatcctgagtttca 88
|| ||||||||||||||||||||||||
Sbjct: 60 tcatttgcgctatccatcctgagtttca 87
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttcat 88
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccat 33
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgccatg 34
|||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatg 38
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| ||||||||||
Sbjct: 77 gcgctatccatcctgagttccatggcttct 106
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatggatg 38
||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatg 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 tcttctcttgcgctatccatcctgagtttcat 89
|||||| | |||||||||||||||||||||||
Sbjct: 96 tcttctatagcgctatccatcctgagtttcat 127
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgcca 32
||||||||| ||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 ttgcgctatccatcctgagtttcat 89
|||||||||||||||||||||||||
Sbjct: 90 ttgcgctatccatcctgagtttcat 114
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 taaagctcaggagggatagcgccatgg 35
|||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| ||| ||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttct 116
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgcc 31
||||||||| |||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 atctgtaaagctcaggagggatagcgccatg 34
|||||| ||||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tctgtaaagctcaggagggatagcgcc 31
||||| |||||||||||||||||||||
Sbjct: 9 tctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttca 88
||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttca 112
