miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 95 atatggaggtgggcatactgtcaactgagctctgttgg 132
|||||||||||||||||||| |||||||||||||||||
Sbjct: 96 atatggaggtgggcatactgccaactgagctctgttgg 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcc 58
|||||| |||||||||||||||||||||||
Sbjct: 4 acagagcttattggcattctgtccacctcc 33
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctccact 61
|||||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctccact 36
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 99 ggaggtgggcatactgtcaactgagctctgtt 130
||||||||||||||||||||| ||||||||||
Sbjct: 88 ggaggtgggcatactgtcaacagagctctgtt 119
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcca 59
|||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcca 34
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 97 atggaggtgggcatactgtcaactgagctctgttgg 132
||||||||||||| |||| |||||||||||||||||
Sbjct: 86 atggaggtgggcaaactgccaactgagctctgttgg 121
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgtcaactgagctctgttgg 132
||||||||||||||||| |||||||||||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcca 59
||||||||| |||||||||||||||||||||
Sbjct: 4 acagagttttttggcattctgtccacctcca 34
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcc 58
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 95 atatggaggtgggcatactgtcaactgagctctgttgg 132
|||||||||||||||||||| |||| ||||||||||||
Sbjct: 62 atatggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcc 58
||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcc 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgtcaactgagctctgttgg 132
||||||||||||||||| |||| |||||||||||
Sbjct: 64 tggaggtgggcatactgccaaccaagctctgttgg 98
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 29 acagagtttattggcattctgtccacctcc 58
|||||||| ||||||||||||||||||||
Sbjct: 4 acagagttctttggcattctgtccacctcc 33
