miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaaca 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaaca 60
Query: 79 tgaatcggtcgataaacctctgcatccagc 108
||||||||||||||||||||||||||||||
Sbjct: 61 tgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
|||||||||||||||||||||||||| ||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctgaa 35
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 75 aacatgaatcggtcgataaacctctgcatccagc 108
||||||||||| ||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccagc 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctg 51
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 78/93 (83%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 58
Query: 76 acatgaatcggtcgataaacctctgcatccagc 108
||||||| || ||||||||||||||||||||||
Sbjct: 59 acatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 77 catgaatcggtcgataaacctctgcatccagc 108
||||||||| ||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctg 51
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 cactggatgcagcggttcatcgatctgttcctgaa 53
||||||| |||||||||||||||||| ||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||| ||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 77 catgaatcggtcgataaacctctgcatccagc 108
||||||| | ||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatccagc 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctggatgcagcggttcatcgatctgttcctg 51
||||| |||||||||||||||||| ||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
