miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 agcaaggtattggcgcgcctcaatttgaatacatggctataaaaatgcatcatatcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 agcaaggtattggcgcgcctcaatttgaatacatggctataaaaatgcatcatatcagcc 65
Query: 61 atgtagtttgattgagccgcgtcaatatcttgtt 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 atgtagtttgattgagccgcgtcaatatcttgtt 99
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 60 catgtagtttgattgagccgcgtcaatatcttg 92
|||||||||||||||||||||||||||||||||
Sbjct: 63 catgtagtttgattgagccgcgtcaatatcttg 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 3 caaggtattggcgcgcctcaatttgaatacatggct 38
|||||||||| |||| ||||||||||| ||||||||
Sbjct: 8 caaggtattgacgcgtctcaatttgaagacatggct 43
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 57 agccatgtagtttgattgagccgcgtcaatatct 90
||||||||| ||||||||||||||||||||||||
Sbjct: 61 agccatgtaatttgattgagccgcgtcaatatct 94
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 52 atatcagccatgtagtttgattgagccgcgtcaatatct 90
|||| |||||||| ||||||||||||||||||||||||
Sbjct: 54 atattagccatgtgatttgattgagccgcgtcaatatct 92
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 56 cagccatgtagtttgattgagccgcgtcaatatct 90
||||||||| || |||||||||||||||||||||
Sbjct: 59 cagccatgttcttggattgagccgcgtcaatatct 93
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 56 cagccatgtagtttgattgagccgcgtcaatatct 90
||||||||| || |||||||||||||||||||||
Sbjct: 56 cagccatgttcttggattgagccgcgtcaatatct 90
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgcgtcaatatct 90
||||||||||||||||||||||
Sbjct: 72 tgattgagccgcgtcaatatct 93
