miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 11 ttttctcttggagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatgg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttctcttggagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatgg 60
Query: 71 atagttcttgttcaatgaagtatttgggggaactcttggaattga 115
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atagttcttgttcaatgaagtatttgggggaactcttggaattga 105
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 129 bits (65), Expect = 9e-30
Identities = 94/105 (89%), Gaps = 9/105 (8%)
Strand = Plus / Plus
Query: 11 ttttctcttggagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatgg 70
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 ttttctcttggagttcctctgaatgcttcaaacatgagacaatcta---------tatgg 51
Query: 71 atagttcttgttcaatgaagtatttgggggaactcttggaattga 115
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 52 atagttcttgttcaatgaagtgtttgggggaactcttggaattga 96
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 70 gatagttcttgttcaatgaagtatttgggggaactcttgg 109
|||||||||| || |||||||| |||||||||||||||||
Sbjct: 75 gatagttcttcttaaatgaagtgtttgggggaactcttgg 114
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 70 gatagttcttgttcaatgaagtatttgggggaactcttgg 109
|||||||||| |||||||||| |||||||||||||||||
Sbjct: 71 gatagttcttcatcaatgaagtgtttgggggaactcttgg 110
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 71 atagttcttgttcaatgaagtatttgggggaactcttgg 109
||||||||| || |||||||| |||||||||||||||||
Sbjct: 71 atagttcttcttaaatgaagtgtttgggggaactcttgg 109
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 81 ttcaatgaagtatttgggggaactcttggaattga 115
||||||||||| |||||||||||||||||| ||||
Sbjct: 87 ttcaatgaagtgtttgggggaactcttggagttga 121
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctcttggagttcctctgaatgcttca 40
|||||||||||||||||||||||||||
Sbjct: 4 tctcttggagttcctctgaatgcttca 30
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 81 ttcaatgaagtatttgggggaactcttggaatt 113
|||| |||||| |||||||||||||||||||||
Sbjct: 49 ttcattgaagtgtttgggggaactcttggaatt 81
