miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score =  220 bits (111), Expect = 3e-57
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 65

                                                              
Query: 61  attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgga 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgga 116




>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
           (barrel medic)
          Length = 120

 Score =  131 bits (66), Expect = 2e-30
 Identities = 100/110 (90%), Gaps = 1/110 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 6   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatcc 65

                                                             
Query: 61  attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgg 110
           ||||| | ||||||    || || ||||||||||||||||||||||||||
Sbjct: 66  attaggatagatag-ttcttcttaaatgaagtgtttgggggaactcttgg 114




>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score =  107 bits (54), Expect = 3e-23
 Identities = 99/112 (88%), Gaps = 9/112 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
           |||||||||||||||||||||||||||||||||||    ||| ||||||||||||  |||
Sbjct: 6   tcttagagttcctttgaacgcttcatgcatgagaa----tatgtatttggtctaatatcc 61

                                                               
Query: 61  attagaaaagatagccattttt--tcaatgaagtgtttgggggaactcttgg 110
           ||||||||||||||   || ||  ||||||||||||||||||||||||||||
Sbjct: 62  attagaaaagatag---ttcttcatcaatgaagtgtttgggggaactcttgg 110




>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score =  105 bits (53), Expect = 1e-22
 Identities = 98/110 (89%), Gaps = 6/110 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 60
           |||||||||||||||||||||||||||||||||||    ||||||||||||||||| |||
Sbjct: 6   tcttagagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatcc 61

                                                             
Query: 61  attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgg 110
           ||||||||| ||||    || || ||||||||||||||||||||||||||
Sbjct: 62  attagaaaa-atag-ttcttcttaaatgaagtgtttgggggaactcttgg 109




>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
          Length = 114

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 51  tctaaagtccattagaaaagatagccattttttcaatgaagtgtttgggggaactc 106
           |||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 49  tctaaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104




>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
           (barrel medic)
          Length = 96

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 82  ttcaatgaagtgtttgggggaactcttgga 111
           ||||||||||||||||||||||||||||||
Sbjct: 62  ttcaatgaagtgtttgggggaactcttgga 91




>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
           (barrel medic)
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 82  ttcaatgaagtgtttgggggaactcttgga 111
           ||||||||||| ||||||||||||||||||
Sbjct: 71  ttcaatgaagtatttgggggaactcttgga 100




>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
           (barrel medic)
          Length = 83

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 82  ttcaatgaagtgtttgggggaactcttgga 111
           |||| |||||||||||||||||||||||||
Sbjct: 49  ttcattgaagtgtttgggggaactcttgga 78




>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
           (barrel medic)
          Length = 103

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 86  atgaagtgtttgggggaactcttgg 110
           |||||||||||||||||||||||||
Sbjct: 73  atgaagtgtttgggggaactcttgg 97




>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 87  tgaagtgtttgggggaactcttgga 111
           |||||||||||||||||||||||||
Sbjct: 62  tgaagtgtttgggggaactcttgga 86




>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
           (sorghum)
          Length = 103

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 86  atgaagtgtttgggggaactcttgg 110
           |||||||||||||||||||||||||
Sbjct: 73  atgaagtgtttgggggaactcttgg 97




>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
           (papaya)
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 50  tgaagtgtttgggggaactcttgg 73




>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
           (castor bean)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 57  tgaagtgtttgggggaactcttgg 80




>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
           (sorghum)
          Length = 91

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 62  tgaagtgtttgggggaactcttgg 85




>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
           (sorghum)
          Length = 103

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 74  tgaagtgtttgggggaactcttgg 97




>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
           (sorghum)
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 56  tgaagtgtttgggggaactcttgg 79




>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
           Japonica Group
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 70  tgaagtgtttgggggaactcttgg 93




>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
           Group
          Length = 114

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  tgaagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||||
Sbjct: 85  tgaagtgtttgggggaactcttgg 108




>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
           (papaya)
          Length = 79

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  tgaagtgtttgggggaactcttg 109
           |||||||||||||||||||||||
Sbjct: 50  tgaagtgtttgggggaactcttg 72




>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 87  tgaagtgtttgggggaactcttg 109
           |||||||||||||||||||||||
Sbjct: 58  tgaagtgtttgggggaactcttg 80




>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
          Length = 94

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  aagtgtttgggggaactcttgg 110
           ||||||||||||||||||||||
Sbjct: 67  aagtgtttgggggaactcttgg 88




>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
           (sorghum)
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgaagtgtttgggggaactctt 108
           ||||||||||||||||||||||
Sbjct: 57  tgaagtgtttgggggaactctt 78




>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
           Indica Group
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tgaagtgtttgggggaactctt 108
           ||||||||||||||||||||||
Sbjct: 57  tgaagtgtttgggggaactctt 78