miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 5 acagggccgacccgagaccacatgaagttatcatatgtgtctaagctacacatctcgtgt 64
|||||| |||| |||||||||||||| |||||||| |||||| | || || ||| |||
Sbjct: 10 acagggtcgacatgagaccacatgaagctatcatatttgtctatgttatccaactcatgt 69
Query: 65 gttctcaggtcgcccctgctgaa 87
|||||||||||||||||||||||
Sbjct: 70 gttctcaggtcgcccctgctgaa 92
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tcgtgtgttctcaggtcgcccctgctg 85
|||||||||||||||||||||||||||
Sbjct: 95 tcgtgtgttctcaggtcgcccctgctg 121
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 tctcgtgtgttctcaggtcgcccctgctg 85
|||| ||||||||||||||||||||||||
Sbjct: 55 tctcatgtgttctcaggtcgcccctgctg 83
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcgtgtgttctcaggtcgcccctgc 83
|||||||||||||||||||||||||
Sbjct: 55 tcgtgtgttctcaggtcgcccctgc 79
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 51 tgtgttctcaggtcgcccctgc 72
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 56 tgtgttctcaggtcgcccctgc 77
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 108 tgtgttctcaggtcgcccctgc 129
