miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 11 tgaggaatgatagggaaaatctcttttggcagagaggagtaaaaatcttaaacaggaatg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggaatgatagggaaaatctcttttggcagagaggagtaaaaatcttaaacaggaatg 60
Query: 71 tttctggtttgccaaaggagatttgccctgccatttttga 110
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctggtttgccaaaggagatttgccctgccatttttga 100
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 85.7 bits (43), Expect = 1e-16
Identities = 89/104 (85%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 11 tgaggaatgatagggaaaatctcttttggcagagaggag----taaaaatcttaaacagg 66
||||||||||||||| ||||||||||||||||||||||| || | | ||| |||| |
Sbjct: 1 tgaggaatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatg 60
Query: 67 aatgtttctggtttgccaaaggagatttgccctgccatttttga 110
|| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 61 cttgcttctagtttgccaaagaagatttgccctgccatttttga 104
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 83.8 bits (42), Expect = 5e-16
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 13 aggaatgatagggaaaatctcttttggcagagaggagtaaaaatcttaaacaggaatgtt 72
||||||||||| | |||||||| || ||||| | |||| ||| ||| ||| | ||| |
Sbjct: 3 aggaatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgct 62
Query: 73 tctggtttgccaaaggagatttgccctgccatttttga 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tctggtttgccaaaggagatttgccctgccatttttga 100
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 78 tttgccaaaggagatttgccctgccatt 105
||||||||||||||||||||||||||||
Sbjct: 64 tttgccaaaggagatttgccctgccatt 91
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 75 tggtttgccaaaggagatttgccctgccatt 105
||||||||||||||||| |||||||||||||
Sbjct: 92 tggtttgccaaaggagaattgccctgccatt 122
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 71 tttctggtttgccaaaggagatttgccctgccatt 105
|||||| |||||||||||||| |||||||||||||
Sbjct: 63 tttctgttttgccaaaggagaattgccctgccatt 97
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 72 ttctggtttgccaaaggagatttgccctgccatt 105
||||| |||||||||||||| |||||||||||||
Sbjct: 54 ttctgttttgccaaaggagaattgccctgccatt 87
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 ttgccaaaggagatttgccctgccatt 105
||||||||||||| |||||||||||||
Sbjct: 81 ttgccaaaggagaattgccctgccatt 107
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccatt 90
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccatt 108
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccatt 108
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccatt 92
