miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/77264-77379 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 198 bits (100), Expect = 1e-50
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 1 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 67
Query: 61 atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 68 atctcttagtgtgcaatctgccaaagaagatttgcccagcgatt 111
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 167 bits (84), Expect = 4e-41
Identities = 100/104 (96%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 8 ttacagggtgagttctccattggcaggtagctagccactatatgatatgcattgcaa-tc 66
Query: 61 atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 67 atcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 110
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 76 atctgccaaaggagatttgcccagcgatt 104
|||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgatt 114
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 agtgtgcaatctgccaaaggagatttgcccagc 100
||||||| ||||||||||||||||||||||||
Sbjct: 79 agtgtgccttctgccaaaggagatttgcccagc 111
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 agtgtgcaatctgccaaaggagatttgcccagc 100
|||||| || |||||||||||||||||||||||
Sbjct: 75 agtgtgtaacctgccaaaggagatttgcccagc 107
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcccagc 100
||||||||||||||||||||||||
Sbjct: 69 tctgccaaaggagatttgcccagc 92
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcccagc 100
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 tagtgtgcaatctgccaaaggagatttgccc 97
|||||||| |||||||||||||||||||||
Sbjct: 74 tagtgtgccctctgccaaaggagatttgccc 104
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagc 98
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccag 99
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 atctgccaaaggagatttgccc 97
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcgat 103
|||||||||| |||||||||||||||
Sbjct: 52 ctgccaaaggggatttgcccagcgat 77
