miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01917;MIR2587;AC202358.24/41539-41430 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 137 bits (69), Expect = 3e-32
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 2 gatggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaa 61
|||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||| |
Sbjct: 2 gatggtgtcatgatcattgttggccgttcatagaaaccctacaattgcaatgcattgcag 61
Query: 62 cttgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 62 cttgtgtggggttcatataacggtcaacagagacccttgacatcaaaga 110
>RF01917;MIR2587;AC152349.12/76894-76785 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 131 bits (66), Expect = 2e-30
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1 cgatggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcatttta 60
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 1 cgatggtgtcatagtcattgttgaccgttcataggaaccatgcaattgcaatgcattgca 60
Query: 61 acttgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
|||| |||||| |||||||||||||||| |||||| ||||| || |||||
Sbjct: 61 acttttgtgggattcatataacggtcaacagagactcttgatatcaaaga 110
>RF01917;MIR2587;AC149547.26/78413-78517 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 94/105 (89%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaact 63
||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgc-----agct 58
Query: 64 tgtgtggggttcatataacggtcaatagagacccttgacataaaa 108
||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct: 59 tgtgtggggttcatataacggtcaacatagaccattgacataaaa 103
>RF01917;MIR2587;AC122728.32/33601-33710 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 119 bits (60), Expect = 8e-27
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 3 atggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaac 62
||||||||| |||| ||||||||||||||| ||||||||||||| |||||||| | |
Sbjct: 3 atggtgtcacggtcgctgttgaccgttcataggaaccctgcaattcaaatgcattgcagc 62
Query: 63 ttgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
|||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct: 63 ttgtgtggggttcatataacggtcaacaaagacccttgacatcaaaga 110
>RF01917;MIR2587;AC143338.29/31241-31136 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 103 bits (52), Expect = 5e-22
Identities = 95/108 (87%), Gaps = 6/108 (5%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttc-atatgaaccctgcaattgcaatgcattttaac 62
|||||||||||||||||||||| ||| |||||||||||||||||||| |||| |
Sbjct: 4 tggtgtcatggtcattgttgactgttttatatgaaccctgcaattgcattgcag-----c 58
Query: 63 ttgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct: 59 ttgtgtggggttcatataacgatcaacagagacccttgacatcaaaga 106
>RF01917;MIR2587;AC149580.19/82987-83091 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 92/107 (85%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaact 63
|||||||||||||||| ||||| |||| ||||||||||| ||| || |||| |||
Sbjct: 4 tggtgtcatggtcattattgactgttcgtatgaaccctggaataacattgca-----act 58
Query: 64 tgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct: 59 tgtgtggggttcatataacggtcaacagaaacccttgacatcaaaga 105
>RF01917;MIR2587;AC136472.40/14138-14242 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 93/107 (86%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaact 63
||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat---aat--attgcagct 58
Query: 64 tgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
|||||| |||| ||||||| ||||||||| ||| ||||||| |||||
Sbjct: 59 tgtgtgaggttgatataacagtcaatagaaacctttgacatcaaaga 105
>RF01917;MIR2587;FP017205.3/75453-75557 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgc 49
||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatataacccctgcaattgc 49
>RF01917;MIR2587;CU651599.5/108636-108740 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 6 gtgtcatggtcattgttgaccgttcatatgaaccctgcaattgca 50
|||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 6 gtgtcatggtcattgttgaccgttcatacgacccctgcaattgca 50
>RF01917;MIR2587;AC225475.10/94784-94680 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat 46
||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatatgaactctgcaat 46
>RF01917;MIR2587;AC144765.19/125997-126101 3880:Medicago
truncatula (barrel medic)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgc 49
|||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 4 tggtgtcatgatcattgttgaccgttcatataacccctgcaattgc 49
>RF01917;MIR2587;CU459038.1/12856-12752 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 62 cttgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
|||||||||||||||||||| |||||| |||||| |||||||| |||||
Sbjct: 57 cttgtgtggggttcatataatggtcaacagagactcttgacatcaaaga 105
>RF01917;MIR2587;CU179920.2/124764-124661 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 63.9 bits (32), Expect = 4e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgca 55
||||||||||||||||||||||| ||||||||| || | |||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatatgacccatacaattgcattgca 55
>RF01917;MIR2587;AC152496.15/25421-25528 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatt 47
|||||||||||||||||||||||||||||| || || |||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgttcatacgacccttgcaatt 47
>RF01917;MIR2587;CR932965.2/22441-22338 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcatatgaaccctgcaattgc 49
|||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 7 tgtcatggtcattgttgaccgttcatat-acccctgcaattgc 48
>RF01917;MIR2587;AC165275.5/48411-48307 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 3 atggtgtcatggtcattgttgaccgttcatatgaaccctgcaattg 48
|||||||||||||||||||||||| ||||||| | | |||||||||
Sbjct: 3 atggtgtcatggtcattgttgaccattcatataatcgctgcaattg 48
>RF01917;MIR2587;AC135801.24/66662-66752 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 74 tcatataacggtcaatagagacccttgacataaaaga 110
||||||||||||||||||||||| ||||||| |||||
Sbjct: 55 tcatataacggtcaatagagaccattgacatcaaaga 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgc 43
|||||||||||||||||||||||| ||||| || ||||||
Sbjct: 4 tggtgtcatggtcattgttgaccgctcatacgacccctgc 43
>RF01917;MIR2587;AC144619.3/9698-9802 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattg 48
||||||||||||| ||||||||||||||||| |||| || |||||
Sbjct: 4 tggtgtcatggtccttgttgaccgttcatataaaccttgaaattg 48
>RF01917;MIR2587;CT954252.6/94986-95090 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 86/105 (81%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaact 63
||||||||| ||||||||||||||||||| || | ||||||||||| ||| | ||
Sbjct: 4 tggtgtcataatcattgttgaccgttcatacgaccactgcaattgcattgc-----agct 58
Query: 64 tgtgtggggttcatataacggtcaatagagacccttgacataaaa 108
| ||||||| | |||||||||||| | ||| |||||||||||||
Sbjct: 59 tatgtgggggttgtataacggtcaacaaagatccttgacataaaa 103
>RF01917;MIR2587;AC160925.38/40561-40665 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgca 55
|||||||||||||||||||||| | ||||| || |||| |||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttgactgctcatacgacccctacaattgcattgca 55
>RF01917;MIR2587;AC160012.1/20945-21049 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 87/107 (81%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgcattttaact 63
||||||||||||||| |||||||||||||| | | ||||||| ||| ||| | ||
Sbjct: 4 tggtgtcatggtcatcgttgaccgttcatacaaccactgcaatagcattgc-----agct 58
Query: 64 tgtgtggggttcatataacggtcaatagagacccttgacataaaaga 110
| ||||||| | |||| |||||||| ||||||| ||||||| |||||
Sbjct: 59 tatgtgggggttatatgacggtcaacagagacctttgacatcaaaga 105
>RF01917;MIR2587;AC146866.6/38743-38639 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ggtgtcatggtcattgttgaccgttcata 33
||||||||| |||||||||||||||||||
Sbjct: 5 ggtgtcatgatcattgttgaccgttcata 33
>RF01917;MIR2587;AC175686.7/29700-29596 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 atggtgtcatggtcattgttgaccgttcatat 34
||||| || |||||||||||||||||||||||
Sbjct: 3 atggtatcttggtcattgttgaccgttcatat 34
>RF01917;MIR2587;AC158210.18/25459-25356 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaattgcaatgca 55
|||||||||||||||||||| | ||||| || ||||||||||||| ||||
Sbjct: 4 tggtgtcatggtcattgttggtcactcatacgacccctgcaattgcattgca 55
>RF01917;MIR2587;AC141113.5/135348-135452 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcata 33
|||||| ||||||||||||||||||||
Sbjct: 7 tgtcatcgtcattgttgaccgttcata 33
>RF01917;MIR2587;AC126013.12/45355-45251 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 atggtgtcatggtcattgttgaccgtt 29
|||||||||||||||||| ||||||||
Sbjct: 3 atggtgtcatggtcattgctgaccgtt 29
>RF01917;MIR2587;CU928860.2/111479-111375 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 12 tggtcattgttgaccgttcatatgaaccctgcaattgc 49
|||||||||||| |||||||||| | |||||||||||
Sbjct: 12 tggtcattgttgtccgttcatataacacctgcaattgc 49
>RF01917;MIR2587;CR932039.2/14347-14434 3880:Medicago truncatula
(barrel medic)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgac 25
||||||||||||||||||||||
Sbjct: 4 tggtgtcatggtcattgttgac 25
