miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01917;MIR2587;AC149547.26/78413-78517 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
Query: 61 tgtggggttcatataacggtcaacatagaccattgacataaaaag 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtggggttcatataacggtcaacatagaccattgacataaaaag 105
>RF01917;MIR2587;AC225475.10/94784-94680 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 131 bits (66), Expect = 2e-30
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct: 3 gtggtgtcatggtcattgttgaccattcatatgaactctgcaatagcattgaagcttacg 62
Query: 63 tggggttcatataacggtcaacatagaccattga 96
||||||||||||||||| ||||| ||||||||||
Sbjct: 63 tggggttcatataacggccaacagagaccattga 96
>RF01917;MIR2587;AC143338.29/31241-31136 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 91/98 (92%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttc-atatgaaccctgcaatagcattgcagcttgt 61
||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgactgttttatatgaaccctgcaattgcattgcagcttgt 62
Query: 62 gtggggttcatataacggtcaacatagaccattgacat 99
||||||||||||||||| |||||| ||||| |||||||
Sbjct: 63 gtggggttcatataacgatcaacagagacccttgacat 100
>RF01917;MIR2587;AC136472.40/14138-14242 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaataatattgcagcttgtg 62
Query: 63 tggggttcatataacggtcaa 83
|| |||| ||||||| |||||
Sbjct: 63 tgaggttgatataacagtcaa 83
>RF01917;MIR2587;AC149580.19/82987-83091 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||||||
Sbjct: 3 gtggtgtcatggtcattattgactgttcgtatgaaccctggaataacattgcaacttgtg 62
Query: 63 tggggttcatataacggtcaacatagaccattgacat 99
||||||||||||||||||||||| | ||| |||||||
Sbjct: 63 tggggttcatataacggtcaacagaaacccttgacat 99
>RF01917;MIR2587;AC160012.1/20945-21049 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 2 tgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgt 61
||||||||||||||||| |||||||||||||| | | |||||||||||||||||||| |
Sbjct: 2 tgtggtgtcatggtcatcgttgaccgttcatacaaccactgcaatagcattgcagcttat 61
Query: 62 gtggggttcatataacggtcaacatagaccattgacat 99
|||||| | |||| |||||||||| ||||| |||||||
Sbjct: 62 gtgggggttatatgacggtcaacagagacctttgacat 99
>RF01917;MIR2587;CU459038.1/12856-12752 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||| ||||| || || |||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 3 gtggtatcatgatctttattgaccgttcatataaaccatacaatagcattgcagcttgtg 62
Query: 63 tggggttcatataacggtcaacatagaccattgacat 99
|||||||||||||| |||||||| |||| |||||||
Sbjct: 63 tggggttcatataatggtcaacagagactcttgacat 99
>RF01917;MIR2587;AC122728.32/33601-33710 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaata-----gcattgcagct 58
|||||||| |||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4 tggtgtcacggtcgctgttgaccgttcataggaaccctgcaattcaaatgcattgcagct 63
Query: 59 tgtgtggggttcatataacggtcaacatagaccattgacat 99
||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacaaagacccttgacat 104
>RF01917;MIR2587;CT954252.6/94986-95090 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 103 bits (52), Expect = 5e-22
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
|||||||||||| ||||||||||||||||||| || | ||||||| ||||||||||||
Sbjct: 1 ttgtggtgtcataatcattgttgaccgttcatacgaccactgcaattgcattgcagctta 60
Query: 61 tgtggggttcatataacggtcaacatagaccattgacataaaaa 104
||||||| | |||||||||||||| ||| | ||||||||||||
Sbjct: 61 tgtgggggttgtataacggtcaacaaagatccttgacataaaaa 104
>RF01917;MIR2587;CU651599.5/108636-108740 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
|||| |||||||||||||||||||||||||||| || ||||||||| |||| |||||||
Sbjct: 1 ttgtagtgtcatggtcattgttgaccgttcatacgacccctgcaattgcatagcagctta 60
Query: 61 tgtggggttcatataacggtcaacatagaccattgacat 99
|| |||| | ||||||| ||||||| ||||| |||||||
Sbjct: 61 tgcgggggttatataacagtcaacagagacccttgacat 99
>RF01917;MIR2587;CU179920.2/124764-124661 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 99.6 bits (50), Expect = 8e-21
Identities = 87/98 (88%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 2 tgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgt 61
||||||||||||||||||||||||| ||||||||| || | |||| |||||||||||| |
Sbjct: 2 tgtggtgtcatggtcattgttgaccattcatatgacccatacaattgcattgcagcttct 61
Query: 62 gtggggttcatataacggtcaacatagaccattgacat 99
|||||||| |||||| | |||||| ||||| |||||||
Sbjct: 62 gtggggtt-atataatgatcaacagagacctttgacat 98
>RF01917;MIR2587;CR932965.2/22441-22338 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 97.6 bits (49), Expect = 3e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgtggg 66
|||||||||||||||||||||||||||| | ||||||||| || ||||||||| || |||
Sbjct: 7 tgtcatggtcattgttgaccgttcatat-acccctgcaattgctttgcagcttatgcggg 65
Query: 67 gttcatataacggtcaacatagaccattgacataaaa 103
| | |||||||||||||||||||| |||||| ||||
Sbjct: 66 ggttatataacggtcaacatagacatttgacaaaaaa 102
>RF01917;MIR2587;AC202358.24/41539-41430 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 97.6 bits (49), Expect = 3e-20
Identities = 88/101 (87%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagca-----ttgcagct 58
|||||||||| ||||||||| ||||||||| |||||| |||| ||| ||||||||
Sbjct: 4 tggtgtcatgatcattgttggccgttcatagaaaccctacaattgcaatgcattgcagct 63
Query: 59 tgtgtggggttcatataacggtcaacatagaccattgacat 99
||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacagagacccttgacat 104
>RF01917;MIR2587;AC152496.15/25421-25528 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 95.6 bits (48), Expect = 1e-19
Identities = 92/106 (86%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 2 tgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgt 61
|||||||||||||||||||||||||||||||| || || |||||| | ||||||||| |
Sbjct: 2 tgtggtgtcatggtcattgttgaccgttcatacgacccttgcaattactttgcagcttat 61
Query: 62 gtggggt---tcatataacggtcaacatagaccattgacataaaaa 104
|||||| | |||||||| |||||| ||||||||||||||||||
Sbjct: 62 gtggggggggttatataacgatcaacagagaccattgacataaaaa 107
>RF01917;MIR2587;FP017205.3/75453-75557 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
|||||||||||||||||||||||||||||||||| | ||||||||| || ||||| |||
Sbjct: 1 ttgtggtgtcatggtcattgttgaccgttcatataacccctgcaattgctttgcatctta 60
Query: 61 tgtggggttcatataacggtcaaca 85
|| ||| | |||||||||||||||
Sbjct: 61 tgcgggtgttatataacggtcaaca 85
>RF01917;MIR2587;AC160925.38/40561-40665 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||||| | ||||| || |||| |||| |||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgactgctcatacgacccctacaattgcattgcagcttatg 62
Query: 63 tggggttcatataacggtcaacatagaccattgacat 99
| || || |||||||||||||| ||| |||||||||
Sbjct: 63 cgtgggtcgtataacggtcaacaaagatcattgacat 99
>RF01917;MIR2587;AC144765.19/125997-126101 3880:Medicago
truncatula (barrel medic)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
||||||||||||| |||||||||||||||||||| | ||||||||| || |||||||||
Sbjct: 1 ttgtggtgtcatgatcattgttgaccgttcatataacccctgcaattgctttgcagctta 60
Query: 61 tgtggggttcatataacggtcaacatagaccattgacat 99
|| || | |||||| |||||||| ||||| |||||||
Sbjct: 61 tgcaagggttatataatggtcaacagagacctttgacat 99
>RF01917;MIR2587;AC152349.12/76894-76785 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 79.8 bits (40), Expect = 7e-15
Identities = 79/92 (85%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat-----agcattgcagct 58
||||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct: 4 tggtgtcatagtcattgttgaccgttcataggaaccatgcaattgcaatgcattgcaact 63
Query: 59 tgtgtggggttcatataacggtcaacatagac 90
| |||||| |||||||||||||||||| ||||
Sbjct: 64 tttgtgggattcatataacggtcaacagagac 95
>RF01917;MIR2587;AC147428.6/14904-15009 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 79.8 bits (40), Expect = 7e-15
Identities = 86/100 (86%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttg-accgttcatatgaaccctgcaatagcattgcagctt 59
|||||||||||||||||||||| ||||||||||| | ||| |||| || |||||||||
Sbjct: 1 ttgtggtgtcatggtcattgttttaccgttcatataacacctacaattgctttgcagctt 60
Query: 60 gtgtggggttcatataacggtcaacatagaccattgacat 99
||||||| | ||||||||||||| | ||||| |||||||
Sbjct: 61 atgtgggggttatataacggtcaaaacagacctttgacat 100
>RF01917;MIR2587;CU928860.2/111479-111375 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 12 tggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgtggggttca 71
|||||||||||| |||||||||| | |||||||| || ||||||||| || | || | |
Sbjct: 12 tggtcattgttgtccgttcatataacacctgcaattgctttgcagcttatgcgagggtta 71
Query: 72 tataacggtcaacatagaccattgacataaaaa 104
|||||||||||||| ||||| ||||||| ||||
Sbjct: 72 tataacggtcaacagagacctttgacatcaaaa 104
>RF01917;MIR2587;AC158210.18/25459-25356 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 69.9 bits (35), Expect = 7e-12
Identities = 84/99 (84%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
||||||||||||||||||||||| | ||||| || ||||||||| ||||||||||||
Sbjct: 1 ttgtggtgtcatggtcattgttggtcactcatacgacccctgcaattgcattgcagctta 60
Query: 61 tgtggggttcatataacggtcaacatagaccattgacat 99
||| ||| || ||||||| |||||| |||| |||||||
Sbjct: 61 tgttggggtc-tataacgatcaacaacgacccttgacat 98
>RF01917;MIR2587;AC135801.24/66662-66752 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaaccctgc 43
||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 1 ttgtggtgtcatggtcattgttgaccgctcatacgacccctgc 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 tcatataacggtcaacatagaccattgacat 99
||||||||||||||| | |||||||||||||
Sbjct: 55 tcatataacggtcaatagagaccattgacat 85
>RF01917;MIR2587;AC144619.3/9698-9802 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatatgaacc 39
|||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1 ttgtggtgtcatggtccttgttgaccgttcatataaacc 39
>RF01917;MIR2587;AC165275.5/48411-48307 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagctt 59
||||||||||||||||||||||| ||||||| | | ||||||| | |||||||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatataatcgctgcaattgatttgcagctt 59
>RF01917;MIR2587;AC146866.6/38743-38639 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ggtgtcatggtcattgttgaccgttcata 33
||||||||| |||||||||||||||||||
Sbjct: 5 ggtgtcatgatcattgttgaccgttcata 33
>RF01917;MIR2587;CR932039.2/14347-14434 3880:Medicago truncatula
(barrel medic)
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgac 25
|||||||||||||||||||||||||
Sbjct: 1 ttgtggtgtcatggtcattgttgac 25
>RF01917;MIR2587;AC126013.12/45355-45251 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagctt 59
||||||||||||||||| |||||||| ||| | ||||| ||| || |||||||||
Sbjct: 4 tggtgtcatggtcattgctgaccgtttgtataatccctgtaattgctttgcagctt 59
>RF01917;MIR2587;AC175686.7/29700-29596 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tggtcattgttgaccgttcatat 34
|||||||||||||||||||||||
Sbjct: 12 tggtcattgttgaccgttcatat 34
>RF01917;MIR2587;AC141113.5/135348-135452 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcata 33
|||||| ||||||||||||||||||||
Sbjct: 7 tgtcatcgtcattgttgaccgttcata 33
>RF01917;MIR2587;AC131248.14/16699-16590 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 54/63 (85%), Gaps = 5/63 (7%)
Strand = Plus / Plus
Query: 1 ttgtggtgtcatggtcattgttgaccgttcatat----gaaccctgcaatagcattgcag 56
||||||||| ||| ||||||||||| |||||||| || ||||||||| |||||||||
Sbjct: 1 ttgtggtgttatg-tcattgttgactgttcatatatacgacccctgcaattgcattgcag 59
Query: 57 ctt 59
|||
Sbjct: 60 ctt 62
