miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01917;MIR2587;AC149547.26/78413-78517 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 184 bits (93), Expect = 2e-46
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacat 99
||||||||||||||||||||||| |||||||||||||
Sbjct: 63 tggggttcatataacggtcaacatagaccattgacat 99
>RF01917;MIR2587;AC143338.29/31241-31136 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 155 bits (78), Expect = 1e-37
Identities = 100/106 (94%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1 cggtggtgtcatggtcattgttgaccgttc-atatgaaccctgcaatagcattgcagctt 59
||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct: 1 cggtggtgtcatggtcattgttgactgttttatatgaaccctgcaattgcattgcagctt 60
Query: 60 gtgtggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 61 gtgtggggttcatataacgatcaacagagacccttgacatcaaaga 106
>RF01917;MIR2587;AC136472.40/14138-14242 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 143 bits (72), Expect = 5e-34
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 2 ggtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgt 61
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 ggtggtgtcatggtcattgttgaccgttcatatgaaccctgcaataatattgcagcttgt 61
Query: 62 gtggggttcatataacggtcaacagagaccattgacatcaaaga 105
||| |||| ||||||| ||||| ||| ||| |||||||||||||
Sbjct: 62 gtgaggttgatataacagtcaatagaaacctttgacatcaaaga 105
>RF01917;MIR2587;AC225475.10/94784-94680 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 143 bits (72), Expect = 5e-34
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 cggtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 1 cggtggtgtcatggtcattgttgaccattcatatgaactctgcaatagcattgaagctta 60
Query: 61 tgtggggttcatataacggtcaacagagaccattga 96
|||||||||||||||||| ||||||||||||||||
Sbjct: 61 cgtggggttcatataacggccaacagagaccattga 96
>RF01917;MIR2587;AC149580.19/82987-83091 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 141 bits (71), Expect = 2e-33
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||||||
Sbjct: 3 gtggtgtcatggtcattattgactgttcgtatgaaccctggaataacattgcaacttgtg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 63 tggggttcatataacggtcaacagaaacccttgacatcaaaga 105
>RF01917;MIR2587;CU459038.1/12856-12752 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 129 bits (65), Expect = 8e-30
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1 cggtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttg 60
||||||| ||||| || || |||||||||||||| |||| | ||||||||||||||||||
Sbjct: 1 cggtggtatcatgatctttattgaccgttcatataaaccatacaatagcattgcagcttg 60
Query: 61 tgtggggttcatataacggtcaacagagaccattgacatcaaaga 105
|||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 61 tgtggggttcatataatggtcaacagagactcttgacatcaaaga 105
>RF01917;MIR2587;AC160012.1/20945-21049 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 125 bits (63), Expect = 1e-28
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
|||||||||||||||| |||||||||||||| | | |||||||||||||||||||| ||
Sbjct: 3 gtggtgtcatggtcatcgttgaccgttcatacaaccactgcaatagcattgcagcttatg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||| | |||| |||||||||||||||| |||||||||||||
Sbjct: 63 tgggggttatatgacggtcaacagagacctttgacatcaaaga 105
>RF01917;MIR2587;CU651599.5/108636-108740 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 119 bits (60), Expect = 7e-27
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 6 gtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgtgg 65
|||||||||||||||||||||||||||| || ||||||||| |||| ||||||| || ||
Sbjct: 6 gtgtcatggtcattgttgaccgttcatacgacccctgcaattgcatagcagcttatgcgg 65
Query: 66 ggttcatataacggtcaacagagaccattgacatcaaaga 105
|| | ||||||| ||||||||||||| |||||||||||||
Sbjct: 66 gggttatataacagtcaacagagacccttgacatcaaaga 105
>RF01917;MIR2587;CU179920.2/124764-124661 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 117 bits (59), Expect = 3e-26
Identities = 93/103 (90%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
|||||||||||||||||||||||| ||||||||| || | |||| |||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccattcatatgacccatacaattgcattgcagcttctg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||||| |||||| | |||||||||||| |||||||||||||
Sbjct: 63 tggggtt-atataatgatcaacagagacctttgacatcaaaga 104
>RF01917;MIR2587;AC122728.32/33601-33710 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 117 bits (59), Expect = 3e-26
Identities = 95/107 (88%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaata-----gcattgcagct 58
|||||||| |||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4 tggtgtcacggtcgctgttgaccgttcataggaaccctgcaattcaaatgcattgcagct 63
Query: 59 tgtgtggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacaaagacccttgacatcaaaga 110
>RF01917;MIR2587;AC202358.24/41539-41430 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 117 bits (59), Expect = 3e-26
Identities = 95/107 (88%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagca-----ttgcagct 58
|||||||||| ||||||||| ||||||||| |||||| |||| ||| ||||||||
Sbjct: 4 tggtgtcatgatcattgttggccgttcatagaaaccctacaattgcaatgcattgcagct 63
Query: 59 tgtgtggggttcatataacggtcaacagagaccattgacatcaaaga 105
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacagagacccttgacatcaaaga 110
>RF01917;MIR2587;AC144765.19/125997-126101 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||| |||||||||||||||||||| | ||||||||| || ||||||||| ||
Sbjct: 3 gtggtgtcatgatcattgttgaccgttcatataacccctgcaattgctttgcagcttatg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
|| | |||||| |||||||||||||| |||||||||||||
Sbjct: 63 caagggttatataatggtcaacagagacctttgacatcaaaga 105
>RF01917;MIR2587;AC160925.38/40561-40665 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||||| | ||||| || |||| |||| |||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgactgctcatacgacccctacaattgcattgcagcttatg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
| || || |||||||||||||| ||| |||||||||||||||
Sbjct: 63 cgtgggtcgtataacggtcaacaaagatcattgacatcaaaga 105
>RF01917;MIR2587;AC152349.12/76894-76785 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 93.7 bits (47), Expect = 4e-19
Identities = 92/107 (85%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaat-----agcattgcagct 58
||||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct: 4 tggtgtcatagtcattgttgaccgttcataggaaccatgcaattgcaatgcattgcaact 63
Query: 59 tgtgtggggttcatataacggtcaacagagaccattgacatcaaaga 105
| |||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct: 64 tttgtgggattcatataacggtcaacagagactcttgatatcaaaga 110
>RF01917;MIR2587;AC152496.15/25421-25528 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 91.7 bits (46), Expect = 2e-18
Identities = 87/100 (87%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||||||||||||| || || |||||| | ||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatacgacccttgcaattactttgcagcttatg 62
Query: 63 tggggt---tcatataacggtcaacagagaccattgacat 99
||||| | |||||||| ||||||||||||||||||||
Sbjct: 63 tggggggggttatataacgatcaacagagaccattgacat 102
>RF01917;MIR2587;CT954252.6/94986-95090 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
|||||||||| ||||||||||||||||||| || | ||||||| |||||||||||| ||
Sbjct: 3 gtggtgtcataatcattgttgaccgttcatacgaccactgcaattgcattgcagcttatg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacat 99
||||| | |||||||||||||| ||| | |||||||
Sbjct: 63 tgggggttgtataacggtcaacaaagatccttgacat 99
>RF01917;MIR2587;CU928860.2/111479-111375 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 12 tggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgtggggttca 71
|||||||||||| |||||||||| | |||||||| || ||||||||| || | || | |
Sbjct: 12 tggtcattgttgtccgttcatataacacctgcaattgctttgcagcttatgcgagggtta 71
Query: 72 tataacggtcaacagagaccattgacatcaaa 103
|||||||||||||||||||| |||||||||||
Sbjct: 72 tataacggtcaacagagacctttgacatcaaa 103
>RF01917;MIR2587;CR932965.2/22441-22338 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 87.7 bits (44), Expect = 3e-17
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgtggg 66
|||||||||||||||||||||||||||| | ||||||||| || ||||||||| || |||
Sbjct: 7 tgtcatggtcattgttgaccgttcatat-acccctgcaattgctttgcagcttatgcggg 65
Query: 67 gttcatataacggtcaacagagac 90
| | ||||||||||||||| ||||
Sbjct: 66 ggttatataacggtcaacatagac 89
>RF01917;MIR2587;AC147428.6/14904-15009 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 87.7 bits (44), Expect = 3e-17
Identities = 90/104 (86%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttg-accgttcatatgaaccctgcaatagcattgcagcttgt 61
|||||||||||||||||||| ||||||||||| | ||| |||| || ||||||||| |
Sbjct: 3 gtggtgtcatggtcattgttttaccgttcatataacacctacaattgctttgcagcttat 62
Query: 62 gtggggttcatataacggtcaacagagaccattgacatcaaaga 105
|||||| | ||||||||||||| | ||||| |||||||||||||
Sbjct: 63 gtgggggttatataacggtcaaaacagacctttgacatcaaaga 106
>RF01917;MIR2587;FP017205.3/75453-75557 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
|||||||||||||||||||||||||||||||| | ||||||||| || ||||| ||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatataacccctgcaattgctttgcatcttatg 62
Query: 63 tggggttcatataacggtcaaca 85
||| | |||||||||||||||
Sbjct: 63 cgggtgttatataacggtcaaca 85
>RF01917;MIR2587;AC158210.18/25459-25356 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 77.8 bits (39), Expect = 3e-14
Identities = 88/103 (85%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
||||||||||||||||||||| | ||||| || ||||||||| |||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttggtcactcatacgacccctgcaattgcattgcagcttatg 62
Query: 63 tggggttcatataacggtcaacagagaccattgacatcaaaga 105
| ||| || ||||||| |||||| |||| |||||||||||||
Sbjct: 63 ttggggtc-tataacgatcaacaacgacccttgacatcaaaga 104
>RF01917;MIR2587;AC135801.24/66662-66752 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 69 tcatataacggtcaacagagaccattgacatcaaaga 105
||||||||||||||| |||||||||||||||||||||
Sbjct: 55 tcatataacggtcaatagagaccattgacatcaaaga 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgc 43
||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgctcatacgacccctgc 43
>RF01917;MIR2587;AC131248.14/16699-16590 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 60.0 bits (30), Expect = 6e-09
Identities = 82/98 (83%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 14 gtcattgttgaccgttcatat----gaaccctgcaatagcattgcagctt--gtgtgggg 67
|||||||||||| |||||||| || ||||||||| |||||||||||| ||| ||||
Sbjct: 13 gtcattgttgactgttcatatatacgacccctgcaattgcattgcagcttacgtgggggg 72
Query: 68 ttcatataacggtcaacagagaccattgacatcaaaga 105
| ||||||||| |||||| ||| |||||||||||||
Sbjct: 73 gttgtataacggtaaacagaaacctttgacatcaaaga 110
>RF01917;MIR2587;AC144619.3/9698-9802 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgaccgttcatatgaacc 39
|||||||||||||| ||||||||||||||||| ||||
Sbjct: 3 gtggtgtcatggtccttgttgaccgttcatataaacc 39
>RF01917;MIR2587;AC165275.5/48411-48307 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagctt 59
||||||||||||||||||||||| ||||||| | | ||||||| | |||||||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatataatcgctgcaattgatttgcagctt 59
>RF01917;MIR2587;AC126013.12/45355-45251 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 4 tggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtgt 63
||||||||||||||||| |||||||| ||| | ||||| ||| || ||||||||| ||
Sbjct: 4 tggtgtcatggtcattgctgaccgtttgtataatccctgtaattgctttgcagcttatgc 63
Query: 64 ggggttcatataacggtcaacagagaccattgacatcaaa 103
|||| | || ||||||| |||| ||| |||||||||||
Sbjct: 64 ggggattctacgacggtcagcagatacctttgacatcaaa 103
>RF01917;MIR2587;AC146866.6/38743-38639 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ggtgtcatggtcattgttgaccgttcata 33
||||||||| |||||||||||||||||||
Sbjct: 5 ggtgtcatgatcattgttgaccgttcata 33
>RF01917;MIR2587;AC175686.7/29700-29596 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tggtcattgttgaccgttcatat 34
|||||||||||||||||||||||
Sbjct: 12 tggtcattgttgaccgttcatat 34
>RF01917;MIR2587;CR932039.2/14347-14434 3880:Medicago truncatula
(barrel medic)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 gtggtgtcatggtcattgttgac 25
|||||||||||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgac 25
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 72 tataacggtcaacagagaccattgacatcaaaga 105
|||||||||||||||| || |||||||||||||
Sbjct: 55 tataacggtcaacagaagcctttgacatcaaaga 88
>RF01917;MIR2587;AC141113.5/135348-135452 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtcatggtcattgttgaccgttcata 33
|||||| ||||||||||||||||||||
Sbjct: 7 tgtcatcgtcattgttgaccgttcata 33
