miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 101 bits (51), Expect = 2e-21
Identities = 79/86 (91%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 20 ttgacagaagagagagagcacaacccggcatca-gctaaagaaagtctttgcttttgttg 78
||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||
Sbjct: 1 ttgacagaagagagagagcacaacccggcattaggctaaag--agtctttgcctttgttg 58
Query: 79 ggagtgtgctttctcttcttctgtca 104
|||||||||| |||| ||||||||||
Sbjct: 59 ggagtgtgctctctcctcttctgtca 84
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 tgacagaagagagagagcacaacccggcatcagc 54
||||||||||||||||||||||||||||| ||||
Sbjct: 2 tgacagaagagagagagcacaacccggcagcagc 35
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tgacagaagagagagagcacaacccggcatcagc 54
||||||||||||||||||||||||| ||| ||||
Sbjct: 2 tgacagaagagagagagcacaacccagcaccagc 35
