miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 93.7 bits (47), Expect = 5e-19
Identities = 78/88 (88%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||||||||| |||||||||| || | | ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacagggtactttcttgca----tgacatccatgcttgaa 56
Query: 80 gctctgcgtgctcactctctatctgtca 107
|| ||||||||||||||||||||||||
Sbjct: 57 actttgcgtgctcactctctatctgtca 84
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana (thale
cress)
Length = 92
Score = 87.7 bits (44), Expect = 3e-17
Identities = 81/91 (89%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtg-ctttcttgcatgcttg--gctttcatgctt 76
|||||||||||||||||||||||| |||| ||||||||||| ||| | ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggtttcatgctt 60
Query: 77 gaagctctgcgtgctcactctctatctgtca 107
|||||| || |||||||||||||||| ||||
Sbjct: 61 gaagctatgtgtgctcactctctatccgtca 91
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 87.7 bits (44), Expect = 3e-17
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||||| ||| |||||||||| || | ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtctgttcttgcatg---gg--tccatgcttgaa 55
Query: 80 gctctgcgtgctcactctctatctgtcat 108
|||||||||||||||||||||||||||||
Sbjct: 56 gctctgcgtgctcactctctatctgtcat 84
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 73.8 bits (37), Expect = 5e-13
Identities = 81/97 (83%), Gaps = 9/97 (9%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgctt---------ggctttc 70
|||||||||||||||||||||||| |||| |||||||||||||| || ||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtggtttcttgcatgcttttttgattagggtttc 60
Query: 71 atgcttgaagctctgcgtgctcactctctatctgtca 107
|||||||||||| || ||||| ||||||| |||||||
Sbjct: 61 atgcttgaagctatgtgtgcttactctctctctgtca 97
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgca 58
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgctttcttgca 39
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica Group
Length = 88
Score = 69.9 bits (35), Expect = 8e-12
Identities = 78/89 (87%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggtgctttctt-gcatgcttg-gctttcatgcttga 78
||||||||||||||||||||||| ||||||||||| |||||| | || |||||| |
Sbjct: 2 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagc---catgctggg 58
Query: 79 agctctgcgtgctcactctctatctgtca 107
|||| ||||||||||||||||||||||||
Sbjct: 59 agctgtgcgtgctcactctctatctgtca 87
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 67.9 bits (34), Expect = 3e-11
Identities = 75/88 (85%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||||| ||| ||||| || ||| | |||||| || |||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcgtgtatgat---gtttcattctcgaa 57
Query: 80 gctctgcgtgctcactctctatctgtca 107
||| || |||||||||||||||||||||
Sbjct: 58 gctatgtgtgctcactctctatctgtca 85
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||||| |||| ||||| ||||| || || ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtgttttctagcatg-atgttttacatgcttgaa 59
Query: 80 gctctgcgtgctcact-ctctatctgtca 107
|| || ||||||||| ||||||||||||
Sbjct: 60 actatgtgtgctcactgctctatctgtca 88
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 63.9 bits (32), Expect = 5e-10
Identities = 74/88 (84%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||||| ||| ||||| ||||| | |||||||| |||
Sbjct: 1 gtgacagaagagagtgagcacacatggtactttcctgcat-----gaattcatgctcgaa 55
Query: 80 gctctgcgtgctcactctctatctgtca 107
|| |||||||| |||||||||||||||
Sbjct: 56 gccttgcgtgcttactctctatctgtca 83
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggtg-ctttcttgcatgct 62
||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatgct 44
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 60.0 bits (30), Expect = 8e-09
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggtgcttt-cttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||| || || | ||| |||||||| || || |||||| |||
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgcatggatg--ttccatgctcgaa 59
Query: 80 gctctgcgtgctcactctctatctgtcat 108
||||||||||||| |||||| ||||||||
Sbjct: 60 gctctgcgtgctctctctctctctgtcat 88
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 60.0 bits (30), Expect = 8e-09
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatgcttggctttcatgcttgaa 79
|||||||||||||||||||||| | ||| |||| ||||| | | || ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacatatggtcttttcaagcatgat--gtttacatgcttgaa 58
Query: 80 gctctgcgtgctcac-tctctatctgtca 107
||| ||||||||||| |||||||||||||
Sbjct: 59 gctatgcgtgctcacttctctatctgtca 87
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcatg 60
|||| ||||||||||||||||||| |||| |||||||||||
Sbjct: 1 gtgatagaagagagtgagcacacatggtgttttcttgcatg 41
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 58.0 bits (29), Expect = 3e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggtgc-tttcttgcatg 60
||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacagggtgctttctt 55
||||||||||||||||||||||| |||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacacggtggtttctt 36
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/40 (92%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacacagggtgctttcttgcat 59
|||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt--tttcttgcat 38
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacag 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacaca 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 gacagaagagagtgagcacaca 43
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcaca 41
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gtgacagaagagagtgagcaca 41
||||||||||||||||||||||
Sbjct: 1 gtgacagaagagagtgagcaca 22
