miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 113 bits (57), Expect = 5e-25
Identities = 72/76 (94%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggcaattgtatgaaaagccatgcctttgcgggtg 79
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtatg--aaggcatacctttgcgggtg 58
Query: 80 cgtgctcacttctctt 95
||||||||||||||||
Sbjct: 59 cgtgctcacttctctt 74
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 87.7 bits (44), Expect = 3e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggcaattgtatgaaaagccatgcctttgcgggtg 79
|||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||
Sbjct: 1 ctgacagaagagagtgagcacacgcaggcaattgtatg-gaagccataccactgcaggtg 59
Query: 80 cgtgctcacttctctt 95
||||||||| ||||||
Sbjct: 60 cgtgctcacctctctt 75
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggcaatt 52
|||||||||||||||||||||| ||||||||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggcaatt 33
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggcaattgtat 56
||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacacagaggcaattgtat 37
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
(thale cress)
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggca 49
|||||||||||||||||||||| |||||||
Sbjct: 1 ctgacagaagagagtgagcacatgcaggca 30
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus trichocarpa
Length = 85
Score = 52.0 bits (26), Expect = 2e-06
Identities = 74/87 (85%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgc---aggcaattgtatgaaaagccatgcctttgc-g 75
||||||||||||||||||||||| | || |||||||||||| ||| || |||| |
Sbjct: 1 ctgacagaagagagtgagcacacacgaaagctaattgtatgaaag--cataccattgcag 58
Query: 76 ggtgcgtgctcacttctcttctgtcag 102
|||| ||||||||||||||||||||||
Sbjct: 59 ggtgtgtgctcacttctcttctgtcag 85
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacacgcaggcaatt 52
||||||||||||||||||||||| ||||||||
Sbjct: 1 ctgacagaagagagtgagcacacaaaggcaatt 33
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacgcaggcaattgtat 56
|||||||||||||||||||||| ||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacagaggcatttgtat 37
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacgc 44
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacgc 25
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacacg 43
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacg 24
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgacagaagagagtgagcacac 42
|||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagtgagcacac 42
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
