miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/86 (90%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgccatttgcaaagc--ccatcaagagtccggtggccttcgtg 77
||||||||||||||||||||||| |||||||| |||||| |||| ||||||||| |||
Sbjct: 3 atgcctggctccctgtatgccatctgcaaagcgcccatcaggagt--ggtggccttggtg 60
Query: 78 gatggcatgcgaggagccatgcatgc 103
|||||| |||||||||||||||||||
Sbjct: 61 gatggcgtgcgaggagccatgcatgc 86
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtgga 79
||||||||||||||||||||||||||||||| ||| | | ||| ||||||| |||
Sbjct: 3 atgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcgga 62
Query: 80 tggcatgcgaggagccatgcatgc 103
|||| |||||||||||||||||||
Sbjct: 63 tggcgtgcgaggagccatgcatgc 86
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 69.9 bits (35), Expect = 7e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtgg 78
||||||||||||||||||||||||||||| |||||| | | || ||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtgg 61
Query: 79 atggcatgcgaggagccatgcat 101
||||| | ||||||||||||||
Sbjct: 62 atggcgtatgaggagccatgcat 84
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
||||||||||||||||||||||||||| |||||| | || | || |||||| |||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccgagcat-cgctggcctccgtggat 62
Query: 81 ggcatgcgaggagccatgcat 101
||| | ||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcat 83
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgccatttgcaaagc 51
|||||||||||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccatttgcaaagc 34
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
|||||||||||||| |||||||||||| ||| ||||| | |||||||||| ||||||
Sbjct: 4 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 63
Query: 81 ggcatgcgaggagccatgcatgc 103
||| ||| | ||| |||||||||
Sbjct: 64 ggcgtgcaacgagtcatgcatgc 86
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagccca 54
||||||||||||||||||||||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagccca 37
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana (thale
cress)
Length = 85
Score = 56.0 bits (28), Expect = 1e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 18 gtatgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtg 77
||||||||||||||||||||||||| ||| |||||||| || | || || ||| ||||
Sbjct: 1 gtatgcctggctccctgtatgccatatgctgagcccatcgagtat-cgatgacctccgtg 59
Query: 78 gatggcatgcgaggagccatgcat 101
|||||| | ||||||||||||||
Sbjct: 60 gatggcgtatgaggagccatgcat 83
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
||||||||||||||||||||||||| ||| ||||| || ||||| || || |||
Sbjct: 4 tgcctggctccctgtatgccatttgtgaagttcatcagaagcttggtggtctccgcagat 63
Query: 81 ggcatgcgaggagccatgcatgc 103
||||||| |||||||||||||||
Sbjct: 64 ggcatgcaaggagccatgcatgc 86
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttg 45
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttg 45
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcca 41
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcca 41
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 atgcctggctccctgtatgcca 41
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccat 42
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tatgcctggctccctgtatgcc 40
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgtatgccatttgc 46
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29