miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 97.6 bits (49), Expect = 4e-20
Identities = 85/93 (91%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataacacaaa 78
||||||||||||||||||||||||||||||||||||| |||| ||||| || | |||| |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaatcacaga 58
Query: 79 tacatgattcgatcgataaacctctgcatccag 111
|||||| |||||||||||||||||||||||||
Sbjct: 59 -acatgaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 85.7 bits (43), Expect = 1e-16
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctggga-attttgttgtgaga-ataacaca 76
|||||||||||||||||||||||||||||||||| | |||||||||||| | | || |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 77 aatacatgattcgatcgataaacctctgcatccag 111
|| ||||| |||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgg 34
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 gatcgataaacctctgcatccag 111
|||||||||||||||||||||||
Sbjct: 65 gatcgataaacctctgcatccag 87
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 cgatcgataaacctctgcatccag 111
||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgggaatttt 59
||||||||||||||| ||||||||||| ||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctttgtgggaatttt 41
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 66 tcgatcgataaacctctgcatccag 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctgggaat 56
||||||||||||||||||||||| |||||| ||||
Sbjct: 3 ctggaggcagcggttcatcgatcaattcctgtgaat 38
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 acatgattcgatcgataaacctctgcatccag 111
|||||| ||| |||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 107 tcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 133 tcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccag 111
|||||||||||||||||||||||||
Sbjct: 134 tcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 87 tcgatcgataaacctctgcatccaga 112
||||||||||| ||||||||||||||
Sbjct: 92 tcgatcgataagcctctgcatccaga 117
