miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 agctccttgttggagaagcagggcacgtgcaa 42
||||||||||||||||||||||||||||||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgcaa 32
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggttc 118
|||||||||||||||||||||||| ||||||
Sbjct: 65 tgcacgtgctccccttctccaacatgggttc 95
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 agctccttgttggagaagcagggcacgtgca 41
|||||||||||||||||||||||||||||||
Sbjct: 1 agctccttgttggagaagcagggcacgtgca 31
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggttc 118
|||||||||||||||||||||||| ||||||
Sbjct: 89 tgcacgtgctccccttctccaacatgggttc 119
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 agctccttgttggagaagcagggcacgtgcaaa 43
|||||| ||||||||||||||||||||||||||
Sbjct: 1 agctccctgttggagaagcagggcacgtgcaaa 33
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggttc 118
|||||||||||||||||||||||| ||||||
Sbjct: 56 tgcacgtgctccccttctccaacatgggttc 86
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 86 tctgcacgtgctccccttctccaacacgggttc 118
|||||||||||||||||||||||||| ||||||
Sbjct: 52 tctgcacgtgctccccttctccaacatgggttc 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgca 41
|||| |||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgcaaa 43
||||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaaa 33
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggttc 118
|||||||||||||||||||||||| ||||||
Sbjct: 56 tgcacgtgctccccttctccaacatgggttc 86
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 ctccttgttggagaagcagggcacgtgcaaa 43
|||| ||||||||||||||||||||||||||
Sbjct: 3 ctccatgttggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgcaa 42
|||||||||||||||||||||||||||
Sbjct: 6 cttgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggtt 117
|||||||||||||||||||||||| |||||
Sbjct: 54 tgcacgtgctccccttctccaacatgggtt 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgcaa 42
|||| ||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max (soybean)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacg 113
||||||||||||||||||||||||||
Sbjct: 82 tgcacgtgctccccttctccaacacg 107
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 tgttggagaagcagggcacgtgcaa 42
|||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AAAA02016828.1/18978-18860 39946:Oryza sativa
Indica Group
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgcaaaat 45
|||||||||||||||||| |||||||||||
Sbjct: 6 cttgttggagaagcagggtacgtgcaaaat 35
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaaaat 45
|||||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaaaat 27
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaaaat 45
|||||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaaaat 27
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 ccttgttggagaagcagggcacgtgcaaa 43
||||| |||||||||||||||||||||||
Sbjct: 5 ccttgctggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaaca 111
||||||||||||||||||||||||
Sbjct: 82 tgcacgtgctccccttctccaaca 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaaa 43
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaa 33
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tgttggagaagcagggcacgtgca 41
||||||||||||||||||||||||
Sbjct: 8 tgttggagaagcagggcacgtgca 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgcacgtgctccccttctcca 108
||||||||||||||||||||||
Sbjct: 188 ctgcacgtgctccccttctcca 209
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 cttgttggagaagcagggcacgtgcaa 42
|||| ||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgcaa 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 tgcacgtgctccccttctccaacacgggtt 117
|||||||||||| ||||||||||| |||||
Sbjct: 56 tgcacgtgctccacttctccaacatgggtt 85
>RF00647;MIR164;AC226040.1/15354-15265 4641:Musa acuminata
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 ccttgttggagaagcagggcacgtgca 41
|||||||||||||||||| ||||||||
Sbjct: 5 ccttgttggagaagcaggtcacgtgca 31
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gttggagaagcagggcacgtgca 41
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaa 42
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaa 42
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaa 42
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tggagaagcagggcacgtgcaa 42
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
