miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AASG02000725.1/15292-15200 3988:Ricinus communis
(castor bean)
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 13 agccatgctggagaagcagggcacatgctaaagcaatcaga--caaaaatctgagaaatt 70
|||||||||||||||||||||||||||||| | |||||| ||||| ||||| ||||
Sbjct: 3 agccatgctggagaagcagggcacatgctagatttatcagaatgaaaaacctgag-aatt 61
Query: 71 ttgcatgtgccctggctctccagcttggac 100
||||||||||| | | ||||||||||||||
Sbjct: 62 ttgcatgtgcctttgttctccagcttggac 91
>RF00647;MIR164;AC182692.2/98036-98127 3694:Populus trichocarpa
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 agccatgctggagaagcagggcacatgctaaa 44
||||||||||||||||||||||||||||||||
Sbjct: 3 agccatgctggagaagcagggcacatgctaaa 34
>RF00647;MIR164;ABIM01007299.1/659-745 3649:Carica papaya (papaya)
Length = 87
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 catgctggagaagcagggcacatgctaa 43
||||||||||||||||||||||||||||
Sbjct: 6 catgctggagaagcagggcacatgctaa 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 attttgcatgtgccctggctctccag 93
||||||||||||||||||||||||||
Sbjct: 53 attttgcatgtgccctggctctccag 78
>RF00647;MIR164;CAAP02000007.1/54906-54816 29760:Vitis vinifera
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ccatgctggagaagcagggcacatgct 41
|||||||||||||||||||||||||||
Sbjct: 5 ccatgctggagaagcagggcacatgct 31
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 agccatgctggagaagcagggcac 36
||||||||||||||||||||||||
Sbjct: 3 agccatgctggagaagcagggcac 26
>RF00647;MIR164;AP009712.1/25839-25750 34305:Lotus japonicus
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gctggagaagcagggcacatgct 41
|||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacatgct 31
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 12 aagccatgctggagaagcagggcacatgct 41
||||||||||||||||| || |||||||||
Sbjct: 93 aagccatgctggagaaggagcgcacatgct 64
