miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||||||||||||
Sbjct: 108 tgatctcggaccaggcttcattcccgtcaac 138
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 17 atgggaatgttgtttggctcgaggtcatct 46
||||||||||||||||||||||||||||||
Sbjct: 5 atgggaatgttgtttggctcgaggtcatct 34
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 gttgatgggaatgttgtttggctcgaggt 41
|||||||||||||||||||||||||||||
Sbjct: 1 gttgatgggaatgttgtttggctcgaggt 29
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 136 atctcggaccaggcttcattcc 157
||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcc 163
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcccgtcaac 164
||||||||||||||||||||||||| |||||
Sbjct: 95 tgatctcggaccaggcttcattcccctcaac 125
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||||||||||||||||||||||||
Sbjct: 61 atgatctcggaccaggcttcattccc 86
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||||||||||||||||||||||||
Sbjct: 63 atgatctcggaccaggcttcattccc 88
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||||||||||||||||||||||||
Sbjct: 61 atgatctcggaccaggcttcattccc 86
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||||||||||||||||||||||||
Sbjct: 59 atgatctcggaccaggcttcattccc 84
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||||| |||||
Sbjct: 90 gatctcggaccaggcttcattcccctcaac 119
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcccgtcaa 163
||||||||||||||||||||||||| ||||
Sbjct: 67 tgatctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcccgtcaa 163
||||||||||||||||||||||||| ||||
Sbjct: 73 tgatctcggaccaggcttcattcccctcaa 102
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggaatgttgtttggctcgaggtcat 44
|||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtttggctcgaggtcat 32
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||| |||||
Sbjct: 73 tctcggaccaggcttcattcccctcaac 100
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattcc 157
|||||||||||||||||||||||||
Sbjct: 293 atgatctcggaccaggcttcattcc 317
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattccc 158
|||||||||||||||||||||||||
Sbjct: 64 tgatctcggaccaggcttcattccc 88
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattcccgtcaa 163
|||||||||||||||||||||||| ||||
Sbjct: 68 gatctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattcccgtcaac 164
||||| |||||||||||||||||||| |||||
Sbjct: 67 atgatgtcggaccaggcttcattcccctcaac 98
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattcccgtcaac 164
||||| |||||||||||||||||||| |||||
Sbjct: 70 atgatgtcggaccaggcttcattcccctcaac 101
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcc 157
||||||||||||||||||||||||
Sbjct: 287 tgatctcggaccaggcttcattcc 310
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcc 157
||||||||||||||||||||||||
Sbjct: 151 tgatctcggaccaggcttcattcc 174
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcc 157
||||||||||||||||||||||||
Sbjct: 136 tgatctcggaccaggcttcattcc 159
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattcccgtcaac 164
||||| |||||||||||||||||||| |||||
Sbjct: 59 atgatttcggaccaggcttcattcccctcaac 90
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||| |||||
Sbjct: 130 tctcggaccaggcttcattcccctcaac 157
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 134 tgatctcggaccaggcttcattcc 157
||||||||||||||||||||||||
Sbjct: 92 tgatctcggaccaggcttcattcc 115
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 85 gatctcggaccaggcttcattccc 108
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 95 gatctcggaccaggcttcattccc 118
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattccc 208
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 89 gatctcggaccaggcttcattccc 112
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||| |||||
Sbjct: 71 tctcggaccaggcttcattcccctcaac 98
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattccc 185
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattccc 154
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattccc 174
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||| |||||
Sbjct: 60 tctcggaccaggcttcattcccctcaac 87
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattccc 173
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||||| |||||
Sbjct: 60 tctcggaccaggcttcattcccctcaac 87
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattccc 158
||||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattccc 115
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattcc 157
|||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcc 106
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 136 atctcggaccaggcttcattccc 158
|||||||||||||||||||||||
Sbjct: 76 atctcggaccaggcttcattccc 98
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 13 gttgatgggaatgttgtttggctcgaggtca 43
||||| ||||||||||| |||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 135 gatctcggaccaggcttcattcc 157
|||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcc 128
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||| ||||||||||||||||||||
Sbjct: 62 atgatttcggaccaggcttcattccc 87
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 98 tctcggaccaggcttcattccc 119
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 139 tcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||| |||||
Sbjct: 84 tcggaccaggcttcattcccctcaac 109
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 60 tctcggaccaggcttcattccc 81
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 91 tctcggaccaggcttcattccc 112
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 84 tctcggaccaggcttcattccc 105
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 ctcggaccaggcttcattcccgtcaa 163
||||||||||||||||||||| ||||
Sbjct: 62 ctcggaccaggcttcattcccctcaa 87
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 70 tctcggaccaggcttcattccc 91
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 139 tcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||| |||||
Sbjct: 71 tcggaccaggcttcattcccctcaac 96
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 ctcggaccaggcttcattcccgtcaa 163
||||||||||||||||||||| ||||
Sbjct: 68 ctcggaccaggcttcattcccctcaa 93
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 ttgatgggaatgttgtttggctcgaggtca 43
|||| ||||||||||| |||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggtca 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||| ||||||||||||||||||||
Sbjct: 124 atgatgtcggaccaggcttcattccc 149
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 ttgatgggaatgttgtttggctcgaggtca 43
|||| ||||||||||| |||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 133 atgatctcggaccaggcttcattccc 158
||||| ||||||||||||||||||||
Sbjct: 62 atgatttcggaccaggcttcattccc 87
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 80 tctcggaccaggcttcattccc 101
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 76 tctcggaccaggcttcattccc 97
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 ctcggaccaggcttcattcccgtcaa 163
||||||||||||||||||||| ||||
Sbjct: 124 ctcggaccaggcttcattcccctcaa 149
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 139 tcggaccaggcttcattcccgtcaac 164
|||||||||||||||||||| |||||
Sbjct: 65 tcggaccaggcttcattcccctcaac 90
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gggaatgttgtttggctcgaggtcat 44
||||||||||| ||||||||||||||
Sbjct: 7 gggaatgttgtctggctcgaggtcat 32
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 137 tctcggaccaggcttcattccc 158
||||||||||||||||||||||
Sbjct: 66 tctcggaccaggcttcattccc 87
